Homologs of PP_4644 from Pseudomonas putida KT2440

DNA repair enzyme
SEED: DNA repair protein RadA
KEGG: DNA repair protein RadA/Sms

166 hits from BLASTp (E < 0.01)

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Orth	Species	Gene	Name	Description	Fitness	%Id	Cov
	Pseudomonas putida KT2440	PP_4644		DNA repair enzyme	insig.	100	100
o	Pseudomonas sp. BP01	JOY50_RS15685	radA	DNA repair protein RadA	insig.	100	100
o	Pseudomonas lactucae CFBP13502	GEMAOFIL_05014		DNA repair protein RadA	cofit	94	100
o	Pseudomonas fluorescens FW300-N1B4	Pf1N1B4_2768		DNA repair protein RadA	sig.	94	100
o	Pseudomonas sp. RS175	PFR28_03792		DNA repair protein RadA	insig.	94	100
o	Pseudomonas fluorescens GW456-L13	PfGW456L13_1442		DNA repair protein RadA	insig.	94	100
o	Pseudomonas fluorescens FW300-N2E3	AO353_13980		DNA repair protein RadA	strong	94	100
o	Pseudomonas fluorescens FW300-N2C3	AO356_15680		DNA repair protein RadA	strong	94	100
o	Pseudomonas orientalis W4I3	QF045_RS26600		DNA repair protein RadA	insig.	94	100
o	Pseudomonas fluorescens FW300-N2E2	Pf6N2E2_5076		DNA repair protein RadA	strong	93	100
o	Pseudomonas sp. DMC3	GFF3954		DNA repair protein RadA	cofit	93	100
o	Pseudomonas syringae pv. syringae B728a	Psyr_4275		DNA replication and repair protein RadA	insig.	93	100
o	Pseudomonas syringae pv. syringae B728a ΔmexB	Psyr_4275		DNA replication and repair protein RadA	insig.	93	100
o	Pseudomonas fluorescens SBW25	PFLU_RS26230		DNA repair protein RadA	insig.	93	100
o	Pseudomonas fluorescens SBW25-INTG	PFLU_RS26230		DNA repair protein RadA	insig.	93	100
o	Pseudomonas sp. SVBP6	COO64_RS02920	radA	DNA repair protein RadA	insig.	93	100
o	Pseudomonas simiae WCS417	PS417_24305		DNA repair protein RadA	strong	93	100
o	Pseudomonas sp. S08-1	OH686_16185		DNA repair protein RadA	insig.	92	100
o	Pseudomonas segetis P6	ACVTMO_RS19740	radA	DNA repair protein RadA	insig.	91	100
o	Pseudomonas aeruginosa MRSN321	DY961_RS23385	radA;go_function=ATP	DNA repair protein RadA	insig.	91	100
o	Pseudomonas aeruginosa PA14	IKLFDK_00465		DNA repair protein RadA	sig.	91	100
o	Pseudomonas aeruginosa PUPa3	DQ20_RS55850	radA;go_function=ATP	DNA repair protein RadA	sig.	91	100
o	Pseudomonas stutzeri RCH2	Psest_3401		DNA repair protein RadA	strong	89	100
o	Kangiella aquimarina DSM 16071	B158DRAFT_0877		DNA replication and repair protein RadA	strong	66	98
o	Acinetobacter baumannii LAC-4	RR41_RS04415		DNA repair protein RadA	insig.	66	99
o	Acinetobacter radioresistens SK82	MPMX26_02235		DNA repair protein RadA	insig.	66	99
o	Alteromonas macleodii MIT1002	MIT1002_02706		Lon protease 2	insig.	63	100
o	Xanthomonas campestris pv. campestris strain 8004	Xcc-8004.3812.1		DNA repair protein RadA	insig.	65	100
o	Rhodanobacter sp000427505 FW510-R12	LRK53_RS07420		DNA repair protein RadA	insig.	65	99
o	Rhodanobacter denitrificans MT42	LRK55_RS02280		DNA repair protein RadA	cofit	65	99
o	Rhodanobacter denitrificans FW104-10B01	LRK54_RS02525		DNA repair protein RadA	insig.	65	99
o	Escherichia coli BL21	ECD_04265		DNA repair protein	strong	61	100
o	Escherichia fergusonii Becca	EFB2_04057		DNA repair protein RadA	insig.	61	100
o	Escherichia coli HS(pFamp)R (ATCC 700891)	OHPLBJKB_03672		DNA repair protein RadA	insig.	61	100
o	Escherichia coli Nissle 1917	ECOLIN_RS25190		DNA repair protein RadA	insig.	61	100
o	Escherichia coli BW25113	b4389	radA	predicted repair protein (NCBI)	strong	61	100
o	Escherichia coli ECOR38	HEPCGN_09195	radA	DNA repair protein RadA	insig.	61	100
o	Escherichia coli ECOR27	NOLOHH_03520	radA	DNA repair protein RadA	insig.	61	100
o	Escherichia coli ECRC100	OKFHMN_11195	radA	DNA repair protein RadA	cofit	61	100
o	Escherichia coli ECRC101	MCAODC_01710	radA	DNA repair protein RadA	insig.	61	100
o	Escherichia coli ECRC102	NIAGMN_09045	radA	DNA repair protein RadA	cofit	61	100
o	Escherichia coli ECRC62	BNILDI_08075	radA	DNA repair protein RadA	insig.	61	100
o	Escherichia coli ECRC98	JDDGAC_14790	radA	DNA repair protein RadA	insig.	61	100
o	Escherichia coli ECRC99	KEDOAH_16960	radA	DNA repair protein RadA	no data	61	100
o	Rhodanobacter sp. FW510-T8	OKGIIK_09580	radA	DNA repair protein RadA	insig.	64	99
o	Pantoea sp. MT58	IAI47_16345		DNA repair protein RadA	insig.	61	100
o	Pantoea agglomerans CFBP13505 P0401	PagCFBP13505_RS21755		DNA repair protein RadA	cofit	61	100
o	Shewanella sp. ANA-3	Shewana3_1049		DNA repair protein RadA (RefSeq)	insig.	61	100
o	Enterobacter sp. TBS_079	MPMX20_00694		DNA repair protein RadA	insig.	61	100
o	Klebsiella pneumoniae MKP103	KDGMDA_12435		DNA repair protein RadA	sig.	61	100
o	Klebsiella pneumoniae MRSN742743	KFA93_RS10955	radA;go_function=damaged	DNA repair protein RadA	insig.	61	100
o	Klebsiella michiganensis M5al	BWI76_RS04165		DNA repair protein RadA	insig.	61	100
o	Shewanella oneidensis MR-1	SO1226	radA	DNA repair protein RadA (NCBI ptt file)	strong	60	100
o	Enterobacter asburiae PDN3	EX28DRAFT_3597		DNA repair protein RadA	insig.	61	100
o	Serratia liquefaciens MT49	IAI46_02945		DNA repair protein RadA	insig.	60	100
o	Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868	GFF1057		DNA repair protein RadA	insig.	60	100
o	Erwinia tracheiphila SCR3	LU632_RS02550	radA	DNA repair protein RadA	insig.	60	100
o	Erwinia tracheiphila HP pepo 2.2	IJEDHG_06365	radA	DNA repair protein RadA	cofit	60	100
o	Rahnella sp. WP5	EX31_RS04030		DNA repair protein RadA	insig.	60	100
o	Dyella japonica UNC79MFTsu3.2	ABZR86_RS08845		DNA repair protein RadA	strong	64	99
o	Marinobacter adhaerens HP15	HP15_487		DNA repair protein RadA	strong	62	100
o	Erwinia amylovora T8	OLJFJH_01590		DNA repair protein RadA	insig.	60	100
o	Vibrio cholerae E7946 ATCC 55056	CSW01_11870		DNA repair protein RadA	cofit	60	100
o	Shewanella amazonensis SB2B	Sama_0981		DNA repair protein RadA (RefSeq)	strong	61	100
o	Lysobacter sp. OAE881	ABIE51_RS07685		DNA repair protein RadA	insig.	62	99
o	Methylophilus sp. DMC18	GFF1046		DNA repair protein RadA	insig.	62	100
o	Pectobacterium carotovorum WPP14	HER17_RS19085		DNA repair protein RadA	cofit	60	100
o	Dickeya dianthicola ME23	DZA65_RS02485		DNA repair protein RadA	insig.	61	100
o	Paraburkholderia graminis OAS925	ABIE53_002526		DNA repair protein RadA/Sms	sig.	62	99
o	Paraburkholderia sabiae LMG 24235	QEN71_RS06320		DNA repair protein RadA	cofit	63	99
o	Dickeya dianthicola 67-19	HGI48_RS02380		DNA repair protein RadA	insig.	61	100
o	Burkholderia phytofirmans PsJN	BPHYT_RS12235		DNA repair protein RadA	strong	62	99
o	Dickeya dadantii 3937	DDA3937_RS02420		DNA repair protein RadA	insig.	61	100
o	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_00590		DNA replication and repair protein RadA	insig.	61	99
o	Variovorax sp. OAS795	ABID97_RS03770		DNA repair protein RadA	insig.	60	100
o	Cupriavidus basilensis FW507-4G11	RR42_RS12030		DNA repair protein RadA	no data	62	99
o	Herbaspirillum seropedicae SmR1	HSERO_RS10745		DNA repair protein RadA	strong	61	99
o	Ralstonia sp. UNC404CL21Col	ABZR87_RS11670		DNA repair protein RadA	insig.	61	99
o	Ralstonia solanacearum IBSBF1503	RALBFv3_RS00210		DNA repair protein RadA	insig.	62	99
o	Ralstonia solanacearum UW163	UW163_RS13540		DNA repair protein RadA	insig.	62	99
o	Variovorax sp. SCN45	GFF5087		DNA repair protein RadA	insig.	59	100
o	Ralstonia solanacearum GMI1000	RS_RS06880		DNA repair protein RadA	strong	62	99
o	Ralstonia solanacearum PSI07	RPSI07_RS17270		DNA repair protein RadA	strong	62	99
o	Acidovorax sp. GW101-3H11	Ac3H11_3371		DNA repair protein RadA	strong	60	100
o	Dechlorosoma suillum PS	Dsui_2413		DNA repair protein RadA	cofit	61	100
o	Hydrogenophaga sp. GW460-11-11-14-LB1	GFF1833		DNA repair protein RadA	insig.	61	99
o	Castellaniella sp019104865 MT123	ABCV34_RS02345		DNA repair protein RadA	sig.	59	100
o	Dinoroseobacter shibae DFL-12	Dshi_2129		DNA repair protein RadA (RefSeq)	strong	52	94
o	Azospirillum brasilense Sp245	AZOBR_RS08320		DNA repair protein RadA	strong	52	100
o	Rhodopseudomonas palustris CGA009	TX73_015980		DNA repair protein RadA	insig.	52	97
o	Agrobacterium fabrum C58	Atu1077		DNA repair protein	strong	50	95
o	Bacteroides stercoris CC31F	HMPREF1181_RS00075		DNA repair protein RadA	insig.	46	100
o	Parabacteroides merdae CL09T00C40	HMPREF1078_RS08395		DNA repair protein RadA	cofit	45	100
o	Sinorhizobium meliloti 1021	SMc00556		DNA repair protein RadA	strong	48	94
o	Azospirillum sp. SherDot2	MPMX19_00904		DNA repair protein RadA	sig.	51	98
o	Rhizobium sp. OAE497	ABIE40_RS06280		DNA repair protein RadA	insig.	48	95
o	Phaeobacter inhibens DSM 17395	PGA1_c10840		DNA repair protein RadA	strong	51	96
o	Echinicola vietnamensis KMM 6221, DSM 17526	Echvi_1031		DNA repair protein RadA	strong	45	100
o	Bacteroides thetaiotaomicron VPI-5482	BT2406		putative DNA repair protein (NCBI ptt file)	strong	44	100
o	Magnetospirillum magneticum AMB-1	AMB_RS10555		DNA repair protein RadA	insig.	52	92
o	Synechocystis sp000284455 PCC 6803	SGL_RS11815		DNA repair protein RadA	insig.	45	99
o	Bacteroides ovatus ATCC 8483	BACOVA_03019		DNA repair protein RadA	cofit	44	100
o	Pontibacter actiniarum KMM 6156, DSM 19842	CA264_17125		DNA repair protein RadA	cofit	45	100
o	Phocaeicola vulgatus CL09T03C04	HMPREF1058_RS14715		DNA repair protein RadA	sig.	43	100
o	Phocaeicola dorei CL03T12C01	ABI39_RS10420		DNA repair protein RadA	insig.	43	100
o	Bosea sp. OAE506	ABIE41_RS17800		DNA repair protein RadA	strong	50	94
o	Pedobacter sp. GW460-11-11-14-LB5	CA265_RS22660		DNA repair protein RadA	sig.	45	100
o	Sphingomonas koreensis DSMZ 15582	Ga0059261_0751		DNA repair protein RadA	strong	51	96
o	Rhodospirillum rubrum S1H	Rru_A0406		DNA repair protein RadA (NCBI)	strong	51	94
o	Mucilaginibacter yixingensis YX-36 DSM 26809	ABZR88_RS20495		DNA repair protein RadA	insig.	44	95
o	Xanthobacter sp. DMC5	GFF1870		DNA repair protein RadA	insig.	50	94
o	Sphingobium sp. HT1-2	GFF1895		DNA repair protein RadA	cofit	47	100
o	Cellulophaga baltica 18	M666_RS03595		DNA repair protein RadA	insig.	42	100
o	Synechococcus elongatus PCC 7942	Synpcc7942_1452	radA	DNA repair protein RadA	sig.	46	99
o	Brevundimonas sp. GW460-12-10-14-LB2	A4249_RS03745		DNA repair protein RadA	insig.	46	100
o	Caulobacter crescentus NA1000	CCNA_01732		DNA repair protein RadA	strong	48	99
o	Caulobacter crescentus NA1000 Δfur	CCNA_01732		DNA repair protein RadA	cofit	48	99
o	Bifidobacterium breve UCC2003	BBR_RS18740		DNA repair protein RadA	strong	41	100
o	Shewanella loihica PV-4	Shew_2807		DNA repair protein RadA (RefSeq)	strong	42	95
o	Desulfovibrio vulgaris Miyazaki F	DvMF_0471		DNA repair protein RadA (RefSeq)	sig.	41	95
o	Desulfovibrio vulgaris Hildenborough JW710	DVU1590	radA	DNA repair protein RadA (TIGR)	insig.	43	94
o	Fusobacterium nucleatum SB010	HUW76_02270		DNA repair protein RadA	strong	39	94
o	Mycobacterium tuberculosis H37Rv	Rv3585		DNA repair protein RadA (DNA repair protein SMS)	sig.	41	93
	Methanococcus maripaludis JJ	MMJJ_RS08245		ATP-dependent protease LonB	no data	37	18
	Methanococcus maripaludis S2	MMP_RS06110		ATP-dependent protease LonB	strong	37	18
	Pseudomonas stutzeri RCH2	Psest_1407		RecA-superfamily ATPases implicated in signal transduction	sig.	29	30
	Azospirillum sp. SherDot2	MPMX19_03580		Circadian clock protein kinase KaiC	insig.	27	41
	Pseudomonas fluorescens SBW25	PFLU_RS21045		AAA family ATPase	insig.	30	26
	Pseudomonas fluorescens SBW25-INTG	PFLU_RS21045		AAA family ATPase	insig.	30	26
	Rhizobium sp. OAE497	ABIE40_RS28915		ATPase domain-containing protein	cofit	43	13
	Pseudomonas sp. DMC3	GFF3552		Circadian clock protein kinase KaiC	insig.	33	18
	Bosea sp. OAE506	ABIE41_RS18050		endopeptidase La	no data	30	18
	Xanthobacter sp. DMC5	GFF2697		Circadian clock protein kinase KaiC	insig.	45	12
	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_01737		circadian clock protein KaiC	insig.	26	44
	Kangiella aquimarina DSM 16071	B158DRAFT_1038		ATP-dependent protease La	cofit	30	19
	Vibrio cholerae E7946 ATCC 55056	CSW01_09605		endopeptidase La	cofit	33	19
	Azospirillum sp. SherDot2	MPMX19_03580		Circadian clock protein kinase KaiC	insig.	30	24
	Rhodopseudomonas palustris CGA009	TX73_000045		circadian clock protein KaiC	insig.	29	44
	Synechocystis sp000284455 PCC 6803	SGL_RS08835		circadian clock protein KaiC	sig.	25	44
	Pseudomonas sp. RS175	PFR28_01469		Circadian clock protein kinase KaiC	sig.	36	16
	Variovorax sp. OAS795	ABID97_RS10010		ATPase domain-containing protein	insig.	50	12
	Paraburkholderia sabiae LMG 24235	QEN71_RS39485		gas vesicle protein GvpD	insig.	44	14
	Rhizobium sp. OAE497	ABIE40_RS28095		ATPase domain-containing protein	insig.	29	25
	Variovorax sp. SCN45	GFF1414		Circadian clock protein KaiC	insig.	27	47
	Synechococcus elongatus PCC 7942	Synpcc7942_1216	kaiC	circadian clock protein KaiC	strong	25	43
	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_03889		circadian clock protein KaiC	insig.	25	39
	Pantoea sp. MT58	IAI47_14645		endopeptidase La	no data	30	19
	Pantoea agglomerans CFBP13505 P0401	PagCFBP13505_RS10550		endopeptidase La	no data	30	19
	Xanthomonas campestris pv. campestris strain 8004	Xcc-8004.3195.1		RecA-superfamily ATPases implicated in signal transduction	insig.	31	20
	Paraburkholderia graminis OAS925	ABIE53_004941		circadian clock protein KaiC	sig.	25	39
	Variovorax sp. SCN45	GFF1414		Circadian clock protein KaiC	insig.	25	41
	Desulfovibrio vulgaris Hildenborough JW710	DORF15206		no description	insig.	23	40
	Pseudomonas syringae pv. syringae B728a	Psyr_2451		KaiC	insig.	42	12
	Pseudomonas syringae pv. syringae B728a ΔmexB	Psyr_2451		KaiC	insig.	42	12
	Pseudomonas fluorescens FW300-N2E2	Pf6N2E2_821		KaiC	insig.	42	12
	Desulfovibrio vulgaris Hildenborough JW710	DVU1191	lon	ATP-dependent protease La, putative (TIGR)	strong	31	19
	Pseudomonas fluorescens FW300-N1B4	Pf1N1B4_4861		KaiC	insig.	42	12
	Xanthobacter sp. DMC5	GFF1156		Lon protease	no data	28	18
	Azospirillum brasilense Sp245	AZOBR_RS32590		circadian clock protein KaiC	insig.	27	42
	Pseudomonas fluorescens FW300-N2C3	AO356_27620		circadian clock protein KaiC	sig.	40	12
	Lysobacter sp. OAE881	ABIE51_RS09910		ATPase domain-containing protein	insig.	35	15
	Enterobacter asburiae PDN3	EX28DRAFT_2531		endopeptidase La	strong	31	18
	Enterobacter sp. TBS_079	MPMX20_01030		Lon protease	strong	31	18
	Pseudomonas fluorescens GW456-L13	PfGW456L13_3054		KaiC	insig.	42	12
	Sinorhizobium meliloti 1021	SMc01905		ATP-dependent protease LA protein	no data	29	17
	Sinorhizobium meliloti 1021	SMa2061		hypothetical protein	insig.	29	41