Gammaproteobacteria: Pseudomonas stutzeri RCH2
NCBI taxonomy id: 644801
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| unrecorded | 1 | 13 |
| anaerobic | 6 | 27 |
| carbon source | 33 | 75 |
| lb | 1 | 11 |
| metal limitation | 11 | 41 |
| nitrogen source | 19 | 53 |
| nutrient | 3 | 6 |
| radiation | 1 | 3 |
| stress | 79 | 180 |
| temperature | 2 | 11 |
| vitamin | 2 | 4 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
729 genes with specific phenotypes, and 235 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| 1 | 34 | |
| anaerobic | 2 | 12 |
| carbon source | 28 | 263 |
| lb | 1 | 1 |
| metal limitation | 3 | 8 |
| nitrogen source | 17 | 140 |
| nutrient | 3 | 22 |
| radiation | 1 | 10 |
| stress | 49 | 487 |
| temperature | 1 | 10 |
| vitamin | 1 | 16 |
Updated Annotations
Updated annotations for 74 genesScaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 427 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 3349 of 4336 genes.