Gammaproteobacteria: Pseudomonas syringae pv. syringae B728a
NCBI taxonomy id: 205918
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| aphid | 1 | 7 |
| carbon source | 12 | 13 |
| in planta | 2 | 30 |
| kb | 1 | 3 |
| mixed community | 1 | 1 |
| no stress control | 1 | 4 |
| nophagecontrol | 1 | 2 |
| stress | 112 | 133 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
356 genes with specific phenotypes, and 95 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| aphid | 1 | 64 |
| carbon source | 12 | 154 |
| in planta | 2 | 39 |
| mixed community | 1 | 3 |
| nophagecontrol | 1 | 1 |
| stress | 25 | 135 |
Scaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 305 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 4314 of 5216 genes.