Euryarchaeota: Methanococcus maripaludis JJ
NCBI taxonomy id: 39152
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| attachment assay; attached sample | 1 | 8 |
| attachment assay; planktonic sample | 2 | 10 |
| biofilm | 2 | 2 |
| formate no stress control | 1 | 3 |
| freezer | 1 | 4 |
| hydrogen no stress control | 1 | 2 |
| iron | 2 | 18 |
| nitrogen source | 8 | 22 |
| no stress control | 1 | 8 |
| nutrient t1 | 17 | 50 |
| nutrient t2 | 6 | 17 |
| plankonic | 1 | 1 |
| planktonic | 1 | 1 |
| rich t1 | 4 | 12 |
| rich t2 | 4 | 10 |
| stress | 25 | 49 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
130 genes with specific phenotypes, and 15 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| biofilm | 1 | 4 |
| formate no stress control | 1 | 2 |
| iron | 1 | 7 |
| nitrogen source | 3 | 51 |
| no stress control | 1 | 1 |
| nutrient t2 | 1 | 14 |
| plankonic | 1 | 2 |
| planktonic | 1 | 2 |
| rich t2 | 1 | 34 |
| stress | 17 | 47 |
Scaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 197 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 1383 of 1861 genes.