Gammaproteobacteria: Pseudomonas fluorescens FW300-N1B4
NCBI taxonomy id: 294
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| anaerobic | 1 | 6 |
| carbon source | 39 | 60 |
| denitrifying | 1 | 15 |
| lb | 1 | 7 |
| nitrogen source | 24 | 33 |
| nophagecontrol | 1 | 5 |
| pH | 3 | 6 |
| phagefrs | 1 | 6 |
| stress | 34 | 45 |
| survival | 1 | 1 |
| temperature | 1 | 7 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
388 genes with specific phenotypes, and 202 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| anaerobic | 1 | 4 |
| carbon source | 34 | 185 |
| denitrifying | 1 | 48 |
| nitrogen source | 19 | 76 |
| pH | 1 | 39 |
| stress | 27 | 119 |
| survival | 1 | 1 |
| temperature | 1 | 4 |
Updated Annotations
Updated annotations for 60 genesScaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 360 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 4336 of 6058 genes.