Betaproteobacteria: Burkholderia phytofirmans PsJN
NCBI taxonomy id: 398527
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| agar plate interaction | 1 | 21 |
| agar plate interaction control | 1 | 10 |
| carbon source | 51 | 77 |
| in planta | 17 | 39 |
| lb | 1 | 3 |
| lb_dap plate control | 1 | 2 |
| lb_dap plate control and outgrow on gent | 1 | 2 |
| lb_nosalt | 1 | 1 |
| motility | 1 | 6 |
| nitrogen source | 16 | 16 |
| no phage control | 1 | 1 |
| nophagecontrol | 1 | 7 |
| nutrient | 4 | 8 |
| pH | 1 | 7 |
| phage | 2 | 66 |
| r2a control | 1 | 3 |
| replicable vector efficiency | 1 | 2 |
| stress | 13 | 16 |
| supernatant | 5 | 11 |
| supernatant control | 2 | 4 |
| supernatant control:fungal media | 1 | 5 |
| temperature | 1 | 6 |
| tn7 efficiency | 1 | 4 |
| vitamin | 2 | 4 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
471 genes with specific phenotypes, and 150 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| agar plate interaction | 1 | 47 |
| agar plate interaction control | 1 | 27 |
| carbon source | 48 | 226 |
| in planta | 17 | 130 |
| motility | 1 | 12 |
| nitrogen source | 14 | 53 |
| nutrient | 3 | 4 |
| pH | 1 | 10 |
| phage | 2 | 26 |
| r2a control | 1 | 2 |
| stress | 11 | 50 |
| supernatant | 3 | 12 |
| supernatant control | 1 | 1 |
| temperature | 1 | 1 |
| vitamin | 1 | 3 |
Updated Annotations
Updated annotations for 86 genesScaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 309 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 5428 of 7263 genes.