Gammaproteobacteria: Escherichia coli Nissle 1917
NCBI taxonomy id: 316435
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| carbon source | 5 | 9 |
| no phage control | 1 | 4 |
| phage | 2 | 66 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- BLAST or Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
98 genes with specific phenotypes, and 38 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| carbon source | 5 | 45 |
| phage | 2 | 53 |
Scaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 291 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 2746 of 5372 genes.