Alphaproteobacteria: Rhodopseudomonas palustris CGA009
NCBI taxonomy id: 258594
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| carbon source | 20 | 71 |
| carbon source dark aerobic | 3 | 11 |
| coculture | 1 | 3 |
| monoculture | 1 | 3 |
| stress | 8 | 27 |
| sulfur source | 11 | 37 |
| sulfur source control | 2 | 7 |
| survival | 1 | 12 |
| survival outgrowth control | 1 | 4 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
362 genes with specific phenotypes, and 14 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| carbon source | 13 | 147 |
| carbon source dark aerobic | 2 | 120 |
| coculture | 1 | 2 |
| monoculture | 1 | 16 |
| stress | 3 | 73 |
| sulfur source | 4 | 49 |
| sulfur source control | 1 | 14 |
| survival | 1 | 14 |
Scaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 340 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 4321 of 5022 genes.