Gammaproteobacteria: Shewanella sp. ANA-3
NCBI taxonomy id: 94122
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| anaerobic | 1 | 2 |
| carbon source | 24 | 49 |
| lb | 1 | 3 |
| motility | 1 | 4 |
| nitrogen source | 7 | 14 |
| stress | 29 | 37 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
182 genes with specific phenotypes, and 65 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| anaerobic | 1 | 16 |
| carbon source | 18 | 71 |
| lb | 1 | 9 |
| motility | 1 | 14 |
| nitrogen source | 6 | 19 |
| stress | 20 | 61 |
Updated Annotations
Updated annotations for 37 genesScaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 529 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 3668 of 4552 genes.