Alphaproteobacteria: Caulobacter crescentus NA1000
NCBI taxonomy id: 565050
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| carbon source | 14 | 42 |
| m5g | 1 | 6 |
| nitrogen source | 23 | 46 |
| no stress control | 1 | 3 |
| pH | 1 | 2 |
| pye | 1 | 10 |
| stress | 32 | 113 |
| survival | 2 | 64 |
| temperature | 2 | 27 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
390 genes with specific phenotypes, and 70 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| carbon source | 12 | 52 |
| nitrogen source | 14 | 85 |
| stress | 25 | 160 |
| survival | 1 | 167 |
| temperature | 1 | 17 |
Updated Annotations
Updated annotations for 35 genesScaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 407 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 3312 of 3943 genes.