Betaproteobacteria: Ralstonia solanacearum IBSBF1503
NCBI taxonomy id: 305
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| cpg | 1 | 3 |
| cpg no stress control | 1 | 3 |
| in planta | 17 | 41 |
| m63_quarter_strength | 1 | 2 |
| smsa no antibiotic control | 1 | 3 |
| stress | 11 | 32 |
| survival | 6 | 13 |
| xylem sap | 1 | 3 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
109 genes with specific phenotypes, and 13 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| in planta | 7 | 15 |
| m63_quarter_strength | 1 | 5 |
| stress | 2 | 5 |
| survival | 4 | 74 |
| xylem sap | 1 | 10 |
Scaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 225 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 3779 of 4897 genes.