Betaproteobacteria: Herbaspirillum seropedicae SmR1
NCBI taxonomy id: 757424
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| agar plate interaction | 2 | 35 |
| agar plate interaction control | 2 | 17 |
| carbon source | 38 | 77 |
| control | 2 | 2 |
| micoeukaryotes | 1 | 6 |
| nitrogen fixation | 2 | 4 |
| nitrogen fixation control | 2 | 8 |
| nitrogen source | 4 | 11 |
| nutrient | 4 | 8 |
| plant | 2 | 7 |
| r2a control | 1 | 6 |
| stress | 13 | 15 |
| supernatant | 7 | 24 |
| supernatant control | 2 | 8 |
| supernatant control:fungal media | 1 | 12 |
| vitamin | 2 | 4 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
403 genes with specific phenotypes, and 118 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| agar plate interaction | 1 | 38 |
| agar plate interaction control | 1 | 14 |
| carbon source | 29 | 176 |
| control | 1 | 4 |
| micoeukaryotes | 1 | 14 |
| nitrogen fixation | 2 | 46 |
| nitrogen fixation control | 2 | 66 |
| nitrogen source | 2 | 17 |
| nutrient | 1 | 1 |
| plant | 2 | 15 |
| r2a control | 1 | 3 |
| stress | 13 | 73 |
| supernatant | 3 | 12 |
| supernatant control | 1 | 2 |
| vitamin | 1 | 3 |
Updated Annotations
Updated annotations for 57 genesScaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 304 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 3879 of 4779 genes.