Betaproteobacteria: Ralstonia solanacearum GMI1000
NCBI taxonomy id: 267608
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| carbon source | 10 | 23 |
| cpg | 1 | 2 |
| cpg no stress control | 1 | 1 |
| in planta | 17 | 31 |
| m63_quarter_strength | 1 | 3 |
| phage | 3 | 8 |
| smsa no antibiotic control | 2 | 2 |
| stress | 11 | 21 |
| survival | 8 | 24 |
| xylem sap | 1 | 3 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- BLAST or Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
120 genes with specific phenotypes, and 32 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| carbon source | 9 | 35 |
| in planta | 10 | 22 |
| m63_quarter_strength | 1 | 7 |
| phage | 1 | 10 |
| stress | 4 | 24 |
| survival | 2 | 27 |
| xylem sap | 1 | 1 |
Scaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 283 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 3980 of 5204 genes.