Cyanobacteria: Synechocystis sp000284455 PCC 6803
NCBI taxonomy id: 1148
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| unrecorded | 1 | 2 |
| carbon dioxide | 3 | 18 |
| control | 1 | 1 |
| glucose | 1 | 1 |
| light_bubbling | 1 | 24 |
| metal stress | 5 | 33 |
| nitrogen source | 12 | 33 |
| no kan control | 1 | 1 |
| no stress control | 1 | 5 |
| photoheterotrophic | 1 | 2 |
| stress | 10 | 26 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- BLAST or Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
294 genes with specific phenotypes, and 3 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| carbon dioxide | 1 | 49 |
| glucose | 1 | 7 |
| light_bubbling | 1 | 119 |
| metal stress | 2 | 5 |
| nitrogen source | 9 | 86 |
| no kan control | 1 | 1 |
| photoheterotrophic | 1 | 18 |
| stress | 8 | 88 |
Scaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 211 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 2595 of 3732 genes.