Alphaproteobacteria: Sphingomonas koreensis DSMZ 15582
NCBI taxonomy id: 93064
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| carbon source | 11 | 31 |
| lb | 1 | 8 |
| motility | 1 | 6 |
| nitrogen source | 5 | 8 |
| nutrient | 6 | 12 |
| pH | 1 | 9 |
| stress | 47 | 86 |
| temperature | 1 | 6 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
290 genes with specific phenotypes, and 73 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| carbon source | 11 | 43 |
| motility | 1 | 22 |
| nitrogen source | 5 | 93 |
| nutrient | 3 | 79 |
| pH | 1 | 1 |
| stress | 34 | 93 |
| temperature | 1 | 3 |
Updated Annotations
Updated annotations for 37 genesScaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 240 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 3393 of 4245 genes.