Alphaproteobacteria: Azospirillum brasilense Sp245
NCBI taxonomy id: 1064539
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| agar plate interaction | 1 | 6 |
| agar plate interaction control | 1 | 3 |
| anaerobic; rich media | 1 | 1 |
| carbon source | 15 | 29 |
| dmso control | 1 | 2 |
| lb | 1 | 4 |
| lb no stress control | 1 | 4 |
| motility | 1 | 4 |
| nitrogen fixation | 3 | 6 |
| nitrogen fixation control | 2 | 5 |
| nitrogen source | 19 | 35 |
| stress | 20 | 62 |
| supernatant | 2 | 4 |
| supernatant control | 1 | 2 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
290 genes with specific phenotypes, and 70 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| agar plate interaction | 1 | 6 |
| agar plate interaction control | 1 | 5 |
| anaerobic; rich media | 1 | 3 |
| carbon source | 13 | 73 |
| lb | 1 | 5 |
| motility | 1 | 37 |
| nitrogen fixation | 2 | 39 |
| nitrogen fixation control | 2 | 29 |
| nitrogen source | 14 | 62 |
| stress | 15 | 80 |
| supernatant | 2 | 3 |
Updated Annotations
Updated annotations for 28 genesScaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 255 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 4833 of 6447 genes.