Betaproteobacteria: Cupriavidus basilensis FW507-4G11
NCBI taxonomy id: 68895
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| carbon source | 41 | 75 |
| lb | 1 | 1 |
| nitrogen source | 17 | 23 |
| oxygen_nitrate | 1 | 4 |
| r2a | 1 | 3 |
| stress | 21 | 34 |
| temperature | 1 | 3 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
482 genes with specific phenotypes, and 124 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| carbon source | 33 | 238 |
| lb | 1 | 18 |
| nitrogen source | 14 | 63 |
| oxygen_nitrate | 1 | 2 |
| stress | 18 | 225 |
| temperature | 1 | 3 |
Updated Annotations
Updated annotations for 50 genesScaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 413 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 6384 of 7449 genes.