Gammaproteobacteria: Shewanella loihica PV-4
NCBI taxonomy id: 323850
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| anaerobic | 1 | 1 |
| carbon source | 13 | 24 |
| lb | 1 | 29 |
| motility | 1 | 4 |
| stress | 40 | 96 |
| temperature | 2 | 6 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
244 genes with specific phenotypes, and 96 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| anaerobic | 1 | 25 |
| carbon source | 12 | 87 |
| motility | 1 | 20 |
| stress | 30 | 124 |
| temperature | 1 | 19 |
Updated Annotations
Updated annotations for 16 genesScaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 482 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 3009 of 3993 genes.