Gammaproteobacteria: Rhodanobacter denitrificans FW104-10B01
NCBI taxonomy id: 75309
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| anaerobic | 2 | 4 |
| biofilm assay; biofilm sample | 3 | 14 |
| biofilm assay; planktonic sample | 4 | 14 |
| carbon source | 15 | 30 |
| low phosphate | 1 | 9 |
| necromass as carbon source; aerobic | 6 | 13 |
| necromass as carbon source; anaerobic | 7 | 14 |
| nldm control | 1 | 6 |
| nldm low iron | 1 | 6 |
| nldm low p | 1 | 6 |
| nldm_defined | 1 | 6 |
| nldm_defined_no_iron | 1 | 6 |
| nldm_defined_nop_in_vitamins | 1 | 3 |
| no phage control | 2 | 4 |
| no stress control | 1 | 9 |
| pH | 2 | 16 |
| phage | 3 | 42 |
| r2a_control | 1 | 50 |
| stress | 44 | 144 |
| survival | 2 | 6 |
| time0_washed | 1 | 1 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- BLAST or Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
483 genes with specific phenotypes, and 48 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| anaerobic | 1 | 63 |
| biofilm assay; biofilm sample | 3 | 36 |
| biofilm assay; planktonic sample | 3 | 26 |
| carbon source | 13 | 108 |
| low phosphate | 1 | 8 |
| necromass as carbon source; aerobic | 1 | 1 |
| necromass as carbon source; anaerobic | 3 | 4 |
| nldm_defined | 1 | 16 |
| nldm_defined_no_iron | 1 | 26 |
| nldm_defined_nop_in_vitamins | 1 | 8 |
| pH | 1 | 38 |
| phage | 3 | 9 |
| stress | 35 | 303 |
| survival | 2 | 15 |
Updated Annotations
Updated annotations for 2 genesScaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 469 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 2933 of 3624 genes.