Gammaproteobacteria: Klebsiella michiganensis M5al
NCBI taxonomy id: 290337
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| agar plate interaction | 2 | 19 |
| agar plate interaction control | 2 | 10 |
| carbon source | 45 | 104 |
| control | 2 | 2 |
| ecofab | 3 | 6 |
| exudates | 3 | 16 |
| lb | 1 | 5 |
| lb dilute | 1 | 5 |
| micoeukaryotes | 1 | 4 |
| mixed community | 21 | 66 |
| nitrogen fixation | 2 | 3 |
| nitrogen fixation control | 1 | 1 |
| nitrogen source | 41 | 67 |
| no stress control | 1 | 2 |
| pH | 1 | 4 |
| phage | 23 | 61 |
| r2a control | 1 | 6 |
| rhizosphere | 1 | 2 |
| stress | 28 | 82 |
| supernatant | 37 | 128 |
| supernatant control | 2 | 6 |
| supernatant control:fungal media | 1 | 11 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
761 genes with specific phenotypes, and 180 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| agar plate interaction | 1 | 40 |
| agar plate interaction control | 1 | 22 |
| carbon source | 40 | 229 |
| control | 2 | 2 |
| ecofab | 1 | 7 |
| exudates | 2 | 7 |
| micoeukaryotes | 1 | 5 |
| mixed community | 12 | 47 |
| nitrogen fixation | 2 | 21 |
| nitrogen fixation control | 1 | 14 |
| nitrogen source | 36 | 137 |
| pH | 1 | 4 |
| phage | 19 | 62 |
| rhizosphere | 1 | 97 |
| stress | 22 | 231 |
| supernatant | 12 | 116 |
| supernatant control | 1 | 4 |
| supernatant control:fungal media | 1 | 1 |
Updated Annotations
Updated annotations for 55 genesScaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 315 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 4608 of 5586 genes.