Alphaproteobacteria: Sinorhizobium meliloti 1021
NCBI taxonomy id: 266834
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| agar plate interaction | 1 | 5 |
| agar plate interaction control | 1 | 6 |
| carbon source | 53 | 95 |
| dmso control | 1 | 4 |
| in planta | 1 | 2 |
| lb | 1 | 5 |
| lb no stress control | 1 | 4 |
| nitrogen source | 13 | 13 |
| nutrient | 3 | 6 |
| pH | 1 | 6 |
| r2a control | 1 | 7 |
| r2a-hepes control | 1 | 12 |
| stress | 21 | 57 |
| temperature | 1 | 4 |
| tsb | 2 | 5 |
| volatiles | 1 | 12 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
444 genes with specific phenotypes, and 177 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| agar plate interaction | 1 | 13 |
| agar plate interaction control | 1 | 7 |
| carbon source | 51 | 259 |
| in planta | 1 | 13 |
| lb | 1 | 14 |
| nitrogen source | 11 | 51 |
| nutrient | 1 | 4 |
| pH | 1 | 44 |
| r2a control | 1 | 2 |
| stress | 19 | 128 |
| tsb | 1 | 13 |
Updated Annotations
Updated annotations for 121 genesScaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 380 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 5133 of 6281 genes.