Gammaproteobacteria: Pseudomonas fluorescens FW300-N2E3
NCBI taxonomy id: 294
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| anaerobic | 2 | 2 |
| carbon source | 46 | 82 |
| denitrifying | 1 | 2 |
| lb | 1 | 4 |
| motility | 1 | 3 |
| nitrogen source | 30 | 38 |
| pH | 3 | 7 |
| radiation | 1 | 1 |
| stress | 42 | 68 |
| survival | 1 | 3 |
| temperature | 1 | 6 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
798 genes with specific phenotypes, and 432 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| anaerobic | 2 | 45 |
| carbon source | 46 | 350 |
| denitrifying | 1 | 5 |
| motility | 1 | 95 |
| nitrogen source | 29 | 150 |
| pH | 1 | 52 |
| radiation | 1 | 5 |
| stress | 38 | 273 |
| survival | 1 | 98 |
| temperature | 1 | 1 |
Updated Annotations
Updated annotations for 115 genesScaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 635 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 5028 of 5854 genes.