Gammaproteobacteria: Rhodanobacter denitrificans MT42
NCBI taxonomy id: 666685
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| nldm control | 1 | 6 |
| nldm low iron | 1 | 6 |
| nldm low p | 1 | 6 |
| no stress control | 2 | 7 |
| pH | 1 | 4 |
| stress | 6 | 12 |
| survival | 1 | 1 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- BLAST or Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
123 genes with specific phenotypes, and 16 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| pH | 1 | 38 |
| stress | 5 | 28 |
| survival | 1 | 57 |
Scaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 329 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 3152 of 3930 genes.