Gammaproteobacteria: Erwinia tracheiphila HP pepo 2.2
NCBI taxonomy id: 65700
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| cucxylem | 1 | 4 |
| hbm-cucxylem | 1 | 2 |
| hbm-glucose | 1 | 2 |
| hbm-sucrose | 1 | 2 |
| in planta | 6 | 6 |
| mjm9 | 1 | 2 |
| rich media | 1 | 2 |
| survival | 1 | 2 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- BLAST or Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
5 genes with specific phenotypes, and 1 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| hbm-sucrose | 1 | 1 |
| in planta | 2 | 3 |
| survival | 1 | 1 |
Scaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 301 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 3046 of 5452 genes.