Cyanobacteria: Synechococcus elongatus PCC 7942
NCBI taxonomy id: 1140
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| bg11 | 1 | 18 |
| biofilm | 3 | 8 |
| circadian | 1 | 4 |
| grazers | 1 | 9 |
| lib 6.2 test | 1 | 1 |
| light-dark | 1 | 15 |
| nitrogen source | 4 | 13 |
| segregation | 1 | 6 |
| stationary phase | 1 | 2 |
| stress | 29 | 98 |
| temperature | 1 | 2 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
299 genes with specific phenotypes, and 6 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| biofilm | 1 | 2 |
| circadian | 1 | 12 |
| grazers | 1 | 20 |
| lib 6.2 test | 1 | 14 |
| light-dark | 1 | 37 |
| nitrogen source | 3 | 4 |
| stationary phase | 1 | 75 |
| stress | 22 | 169 |
| temperature | 1 | 89 |
Updated Annotations
Updated annotations for 2 genesScaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 86 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 1899 of 2722 genes.