Gammaproteobacteria: Pseudomonas fluorescens SBW25-INTG
NCBI taxonomy id: 216595
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| carbon and nitrogen source | 2 | 6 |
| carbon source | 130 | 437 |
| lb outgrowth control | 1 | 3 |
| lb outgrowth control more dilute start | 1 | 2 |
| nitrogen source | 11 | 36 |
| no stress control | 31 | 290 |
| pH | 8 | 34 |
| soil | 22 | 55 |
| stress | 34 | 275 |
| temperature | 2 | 24 |
| temperature shift | 2 | 51 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
1079 genes with specific phenotypes, and 254 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| carbon and nitrogen source | 1 | 45 |
| carbon source | 71 | 734 |
| lb outgrowth control more dilute start | 1 | 1 |
| nitrogen source | 1 | 25 |
| no stress control | 9 | 268 |
| pH | 2 | 62 |
| soil | 20 | 83 |
| stress | 7 | 394 |
| temperature | 1 | 31 |
| temperature shift | 1 | 68 |
Scaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 645 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 5474 of 6217 genes.