Gammaproteobacteria: Xanthomonas campestris pv. campestris strain 8004
NCBI taxonomy id: 314565
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| agar plate interaction | 1 | 23 |
| agar plate interaction control | 1 | 6 |
| carbon source | 4 | 5 |
| clovis xylem sap | 2 | 4 |
| control | 1 | 3 |
| in planta | 1 | 4 |
| in planta mesophyll | 2 | 6 |
| in planta xylem | 4 | 15 |
| moka | 1 | 3 |
| r2a control | 1 | 1 |
| supernatant | 5 | 14 |
| supernatant control:fungal media | 1 | 6 |
| xantho_mme_glucose_casamino | 1 | 4 |
| xantho_mme_glucose_dropout_lth | 1 | 4 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
165 genes with specific phenotypes, and 8 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| agar plate interaction | 1 | 2 |
| agar plate interaction control | 1 | 1 |
| carbon source | 4 | 120 |
| clovis xylem sap | 1 | 1 |
| in planta | 1 | 16 |
| in planta mesophyll | 1 | 2 |
| in planta xylem | 3 | 7 |
| supernatant | 3 | 12 |
| supernatant control:fungal media | 1 | 2 |
| xantho_mme_glucose_casamino | 1 | 3 |
| xantho_mme_glucose_dropout_lth | 1 | 9 |
Updated Annotations
Updated annotations for 1 genesScaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 243 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 3700 of 4617 genes.