Gammaproteobacteria: Shewanella amazonensis SB2B
NCBI taxonomy id: 326297
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| anaerobic | 1 | 1 |
| carbon source | 23 | 64 |
| lb | 1 | 22 |
| motility | 1 | 6 |
| nitrogen source | 16 | 32 |
| pH | 1 | 2 |
| stress | 35 | 56 |
| temperature | 2 | 7 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
524 genes with specific phenotypes, and 163 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| anaerobic | 1 | 58 |
| carbon source | 22 | 170 |
| motility | 1 | 68 |
| nitrogen source | 14 | 92 |
| pH | 1 | 15 |
| stress | 31 | 241 |
| temperature | 1 | 8 |
Updated Annotations
Updated annotations for 59 genesScaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 598 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 3121 of 3785 genes.