Betaproteobacteria: Paraburkholderia graminis OAS925
NCBI taxonomy id: 32008
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| unrecorded | 1 | 2 |
| biofilm | 3 | 6 |
| carbon source | 73 | 154 |
| in planta | 29 | 74 |
| lb_dap plate control | 1 | 1 |
| lb_dap plate control and outgrow on gent | 1 | 2 |
| m9 no stress control | 1 | 4 |
| mixed community | 1 | 2 |
| motility_chemotaxis | 3 | 8 |
| nitrogen source | 4 | 10 |
| pH | 1 | 3 |
| phage | 1 | 11 |
| plant outgrowth control | 2 | 7 |
| r2a no shaking | 1 | 2 |
| r2a outgrowth control | 1 | 16 |
| r2a shaking control | 1 | 2 |
| replicable vector efficiency | 1 | 2 |
| soil extract | 16 | 31 |
| soil extract control | 1 | 1 |
| stress | 49 | 139 |
| stress control | 3 | 8 |
| tn7 efficiency | 1 | 2 |
| wm3064 conjugation control | 1 | 1 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
908 genes with specific phenotypes, and 153 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| biofilm | 2 | 10 |
| carbon source | 67 | 370 |
| in planta | 29 | 487 |
| lb_dap plate control | 1 | 3 |
| lb_dap plate control and outgrow on gent | 1 | 1 |
| m9 no stress control | 1 | 6 |
| motility_chemotaxis | 2 | 18 |
| nitrogen source | 4 | 17 |
| pH | 1 | 1 |
| phage | 1 | 14 |
| plant outgrowth control | 1 | 24 |
| r2a no shaking | 1 | 2 |
| r2a outgrowth control | 1 | 5 |
| replicable vector efficiency | 1 | 1 |
| soil extract | 14 | 115 |
| stress | 26 | 257 |
| tn7 efficiency | 1 | 1 |
| wm3064 conjugation control | 1 | 3 |
Scaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 465 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 5667 of 6579 genes.