Alphaproteobacteria: Dinoroseobacter shibae DFL-12
NCBI taxonomy id: 398580
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| unrecorded | 1 | 2 |
| anaerobic | 1 | 1 |
| carbon source | 21 | 51 |
| marine broth | 1 | 7 |
| nitrogen source | 19 | 36 |
| stress | 41 | 93 |
| temperature | 1 | 6 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
339 genes with specific phenotypes, and 77 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| anaerobic | 1 | 5 |
| carbon source | 17 | 76 |
| nitrogen source | 14 | 38 |
| stress | 38 | 246 |
| temperature | 1 | 2 |
Updated Annotations
Updated annotations for 38 genesScaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 236 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 3187 of 4562 genes.