Betaproteobacteria: Ralstonia sp. UNC404CL21Col
NCBI taxonomy id: 1380362
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| carbon source | 32 | 61 |
| control | 1 | 1 |
| in planta | 2 | 11 |
| micoeukaryotes | 1 | 6 |
| nitrogen source | 3 | 11 |
| no plant control | 1 | 1 |
| no_plant_rhizosphere | 1 | 3 |
| no_plant_soil | 1 | 3 |
| phage | 1 | 5 |
| rhizosphere | 1 | 11 |
| root | 1 | 5 |
| soil | 1 | 11 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
300 genes with specific phenotypes, and 53 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| carbon source | 25 | 195 |
| control | 1 | 1 |
| in planta | 2 | 16 |
| micoeukaryotes | 1 | 13 |
| nitrogen source | 3 | 6 |
| no plant control | 1 | 3 |
| no_plant_rhizosphere | 1 | 27 |
| no_plant_soil | 1 | 5 |
| phage | 1 | 31 |
| rhizosphere | 1 | 13 |
| root | 1 | 10 |
| soil | 1 | 15 |
Scaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 486 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 4014 of 4725 genes.