Actinobacteria: Bifidobacterium breve UCC2003
NCBI taxonomy id: 326426
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| carbon source | 50 | 100 |
| chicken | 3 | 12 |
| chicken coculture | 1 | 3 |
| mouse | 6 | 89 |
| mouse coculture | 2 | 14 |
| mouse preculture | 1 | 9 |
| mrs timecourse | 1 | 8 |
| nutrient dropout | 36 | 74 |
| nutrient dropout control | 1 | 14 |
| stress | 122 | 283 |
| stress control | 1 | 53 |
| stress timecourse | 2 | 16 |
| supernatant | 32 | 66 |
| supernatant control | 1 | 2 |
| temperature | 1 | 4 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
332 genes with specific phenotypes, and 12 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| carbon source | 25 | 45 |
| chicken | 3 | 110 |
| chicken coculture | 1 | 96 |
| mouse | 4 | 61 |
| mouse coculture | 2 | 18 |
| mouse preculture | 1 | 14 |
| mrs timecourse | 1 | 2 |
| nutrient dropout | 29 | 120 |
| nutrient dropout control | 1 | 2 |
| stress | 54 | 105 |
| stress timecourse | 2 | 6 |
| supernatant | 11 | 4 |
Updated Annotations
Updated annotations for 3 genesScaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 101 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 1713 of 2128 genes.