Gammaproteobacteria: Rahnella sp. WP5
NCBI taxonomy id: 1500266
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| carbon source | 7 | 13 |
| mgl | 1 | 6 |
| mixed community | 3 | 17 |
| nf_with10percent_fulln | 1 | 6 |
| nf_with_fulln | 1 | 6 |
| nitrogen source | 6 | 35 |
| nl-ccm | 1 | 6 |
| nl-ccm; ambient oxygen | 1 | 6 |
| nl-ccm; high oxygen | 1 | 6 |
| nl-ccm; low oxygen | 1 | 6 |
| nl-ccm; vial | 1 | 4 |
| nl-ccm_agar | 1 | 6 |
| nln | 1 | 6 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
112 genes with specific phenotypes, and 11 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| carbon source | 7 | 65 |
| mixed community | 1 | 1 |
| nf_with_fulln | 1 | 11 |
| nitrogen source | 3 | 17 |
| nl-ccm; ambient oxygen | 1 | 18 |
Scaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 326 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 4471 of 5032 genes.