Betaproteobacteria: Castellaniella sp019104865 MT123
NCBI taxonomy id: 359336
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| aerobic metal stress | 8 | 40 |
| aerobic no stress control | 1 | 5 |
| anaerobic metal stress | 8 | 40 |
| anaerobic no stress control | 1 | 5 |
| ph; aerobic | 2 | 10 |
| ph; anaerobic | 2 | 10 |
| survival | 16 | 80 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- BLAST or Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
70 genes with specific phenotypes, and 0 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| anaerobic metal stress | 5 | 5 |
| ph; aerobic | 1 | 2 |
| ph; anaerobic | 1 | 60 |
| survival | 4 | 8 |
Scaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 143 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 2410 of 3179 genes.