Deltaproteobacteria: Desulfovibrio vulgaris Miyazaki F
NCBI taxonomy id: 883
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| carbon source | 6 | 25 |
| nitrogen source | 7 | 16 |
| nutrient | 8 | 16 |
| rich | 1 | 2 |
| rich moyls4 | 1 | 14 |
| starvation | 2 | 26 |
| stress | 35 | 89 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
338 genes with specific phenotypes, and 23 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| carbon source | 4 | 25 |
| nitrogen source | 4 | 28 |
| nutrient | 2 | 3 |
| rich | 1 | 6 |
| rich moyls4 | 1 | 4 |
| starvation | 1 | 89 |
| stress | 30 | 235 |
Updated Annotations
Updated annotations for 15 genesScaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 279 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 2531 of 3601 genes.