Gammaproteobacteria: Shewanella oneidensis MR-1
NCBI taxonomy id: 211586
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| carbon source | 16 | 33 |
| control | 1 | 1 |
| electron acceptor | 1 | 3 |
| evt | 4 | 18 |
| flight_in_space | 4 | 17 |
| ground_control | 3 | 11 |
| harv | 4 | 12 |
| lb | 1 | 14 |
| micoeukaryotes | 1 | 3 |
| motility | 1 | 3 |
| nitrogen source | 17 | 35 |
| pH | 3 | 5 |
| rnaprotect test | 2 | 12 |
| stress | 42 | 80 |
| survival | 1 | 15 |
| temperature | 2 | 8 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
613 genes with specific phenotypes, and 139 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| carbon source | 16 | 228 |
| control | 1 | 1 |
| evt | 1 | 19 |
| flight_in_space | 2 | 7 |
| ground_control | 1 | 26 |
| harv | 2 | 14 |
| micoeukaryotes | 1 | 33 |
| motility | 1 | 50 |
| nitrogen source | 16 | 154 |
| pH | 1 | 9 |
| rnaprotect test | 2 | 26 |
| stress | 32 | 282 |
| survival | 1 | 18 |
| temperature | 1 | 11 |
Updated Annotations
Updated annotations for 46 genesScaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 586 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 3782 of 4745 genes.