Bacteroidetes: Bacteroides thetaiotaomicron VPI-5482
NCBI taxonomy id: 226186
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| bhis | 1 | 1 |
| carbon source | 69 | 220 |
| control | 1 | 5 |
| mouse | 2 | 21 |
| mouse; methotrexate | 1 | 41 |
| mouse; vehicle | 1 | 42 |
| mouse; zymosan and methotrexate | 1 | 32 |
| mouse; zymosan and vehicle | 1 | 38 |
| mouse_coculture | 1 | 12 |
| mouse_peg_treatment | 1 | 12 |
| mouse_post_colonization | 1 | 138 |
| mouse_recovery_after_peg | 1 | 3 |
| nitrogen source | 27 | 42 |
| pH | 1 | 4 |
| phage | 14 | 31 |
| stress | 101 | 373 |
| survival | 1 | 2 |
| varel_bryant_medium_glucose | 1 | 4 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- BLAST or Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
579 genes with specific phenotypes, and 51 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| bhis | 1 | 1 |
| carbon source | 57 | 187 |
| control | 1 | 2 |
| mouse | 2 | 5 |
| mouse; methotrexate | 1 | 46 |
| mouse; vehicle | 1 | 7 |
| mouse; zymosan and methotrexate | 1 | 4 |
| mouse; zymosan and vehicle | 1 | 3 |
| mouse_coculture | 1 | 14 |
| mouse_peg_treatment | 1 | 45 |
| mouse_post_colonization | 1 | 75 |
| mouse_recovery_after_peg | 1 | 4 |
| nitrogen source | 12 | 56 |
| phage | 8 | 15 |
| stress | 47 | 287 |
| survival | 1 | 14 |
Updated Annotations
Updated annotations for 84 genesScaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 248 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 4055 of 4902 genes.