Euryarchaeota: Methanococcus maripaludis S2
NCBI taxonomy id: 267377
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| formate no stress control | 1 | 3 |
| freezer | 1 | 4 |
| hydrogen no stress control | 1 | 2 |
| iron | 2 | 18 |
| mixed community | 3 | 26 |
| natural competence | 2 | 4 |
| nitrogen source | 47 | 112 |
| no stress control | 2 | 25 |
| nutrient t1 | 39 | 138 |
| nutrient t2 | 14 | 63 |
| rich t1 | 4 | 18 |
| rich t2 | 4 | 14 |
| stress | 116 | 273 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
173 genes with specific phenotypes, and 20 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| formate no stress control | 1 | 2 |
| iron | 1 | 1 |
| mixed community | 3 | 31 |
| natural competence | 1 | 1 |
| nitrogen source | 30 | 42 |
| no stress control | 1 | 1 |
| nutrient t1 | 5 | 14 |
| nutrient t2 | 4 | 25 |
| rich t1 | 1 | 1 |
| rich t2 | 1 | 13 |
| stress | 48 | 124 |
Updated Annotations
Updated annotations for 2 genesScaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 193 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 1244 of 1793 genes.