Homologs of DZA65_RS08085 from Dickeya dianthicola ME23

type III PLP-dependent enzyme
SEED: Achromobactin biosynthesis protein AcsE, Orn/DAP/Arg decarboxylase family
KEGG: diaminopimelate decarboxylase

194 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Dickeya dianthicola ME23 DZA65_RS08085 type III PLP-dependent enzyme insig. 100 100
o Dickeya dianthicola 67-19 HGI48_RS07540 type III PLP-dependent enzyme insig. 93 100
o Dickeya dadantii 3937 DDA3937_RS07725 type III PLP-dependent enzyme sig. 91 100
o Pseudomonas syringae pv. syringae B728a Psyr_2585 Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2 insig. 72 95
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2585 Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2 insig. 72 95
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS03475 type III PLP-dependent enzyme insig. 48 94
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1402.1 Vibrioferrin decarboxylase protein PvsE insig. 45 97
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS21420 diaminopimelate decarboxylase cofit 43 93
o Ralstonia solanacearum UW163 UW163_RS17770 diaminopimelate decarboxylase insig. 43 93
o Ralstonia solanacearum GMI1000 RS_RS19205 type III PLP-dependent enzyme insig. 43 93
o Ralstonia solanacearum PSI07 RPSI07_RS01715 type III PLP-dependent enzyme insig. 42 93
  Phaeobacter inhibens DSM 17395 PGA1_c13710 diaminopimelate decarboxylase-like protein insig. 31 89
  Burkholderia phytofirmans PsJN BPHYT_RS00645 diaminopimelate decarboxylase insig. 32 89
  Agrobacterium fabrum C58 Atu1673 diaminopimelate decarboxylase insig. 32 89
  Herbaspirillum seropedicae SmR1 HSERO_RS13690 diaminopimelate decarboxylase insig. 35 89
  Sphingobium sp. HT1-2 GFF1511 Diaminopimelate decarboxylase (EC 4.1.1.20) no data 35 89
  Sphingomonas koreensis DSMZ 15582 Ga0059261_4188 pyridoxal-dependent decarboxylase, exosortase A system-associated strong 33 87
  Kangiella aquimarina DSM 16071 B158DRAFT_0272 pyridoxal-dependent decarboxylase, exosortase A system-associated no data 31 90
  Pseudomonas sp. SVBP6 COO64_RS25410 phosphopantetheine-binding protein insig. 31 89
  Shewanella sp. ANA-3 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) strong 33 92
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS13545 diaminopimelate decarboxylase strong 30 89
  Dickeya dianthicola 67-19 HGI48_RS00505 type III PLP-dependent enzyme insig. 31 89
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_02390 diaminopimelate decarboxylase insig. 29 87
  Shewanella loihica PV-4 Shew_0322 diaminopimelate decarboxylase (RefSeq) strong 31 92
  Shewanella amazonensis SB2B Sama_3250 diaminopimelate decarboxylase (RefSeq) strong 31 93
  Dickeya dianthicola ME23 DZA65_RS00505 type III PLP-dependent enzyme insig. 30 89
  Shewanella oneidensis MR-1 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) strong 33 92
  Dickeya dadantii 3937 DDA3937_RS20740 type III PLP-dependent enzyme sig. 31 89
  Methylophilus sp. DMC18 GFF2209 Diaminopimelate decarboxylase no data 30 92
  Pseudomonas putida KT2440 PP_5227 diaminopimelate decarboxylase strong 33 79
  Pseudomonas segetis P6 ACVTMO_RS22510 lysA diaminopimelate decarboxylase strong 32 79
  Vibrio cholerae E7946 ATCC 55056 CSW01_00635 diaminopimelate decarboxylase insig. 32 90
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) strong 31 88
  Marinobacter adhaerens HP15 HP15_247 diaminopimelate decarboxylase no data 30 90
  Dinoroseobacter shibae DFL-12 Dshi_3059 diaminopimelate decarboxylase (RefSeq) no data 29 84
  Pseudomonas orientalis W4I3 QF045_RS21380 type III PLP-dependent enzyme insig. 29 93
  Rahnella sp. WP5 EX31_RS02420 type III PLP-dependent enzyme insig. 28 90
  Rhodospirillum rubrum S1H Rru_A3135 Orn/DAP/Arg decarboxylase 2 (NCBI) sig. 33 87
  Rhodanobacter sp. FW510-T8 OKGIIK_12375 lysA diaminopimelate decarboxylase insig. 32 85
  Dechlorosoma suillum PS Dsui_1182 diaminopimelate decarboxylase no data 30 90
  Ralstonia solanacearum PSI07 RPSI07_RS10250 diaminopimelate decarboxylase no data 31 85
  Herbaspirillum seropedicae SmR1 HSERO_RS00950 diaminopimelate decarboxylase no data 31 89
  Pseudomonas fluorescens GW456-L13 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) strong 32 79
  Bacteroides ovatus ATCC 8483 BACOVA_00215 diaminopimelate decarboxylase strong 29 88
  Cupriavidus basilensis FW507-4G11 RR42_RS19050 diaminopimelate decarboxylase no data 32 83
  Pseudomonas sp. DMC3 GFF367 Diaminopimelate decarboxylase no data 33 79
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) no data 33 79
  Pseudomonas sp. BP01 JOY50_RS22595 lysA diaminopimelate decarboxylase insig. 33 79
  Pseudomonas fluorescens FW300-N2C3 AO356_12740 diaminopimelate decarboxylase no data 31 79
  Alteromonas macleodii MIT1002 MIT1002_00160 Diaminopimelate decarboxylase strong 29 93
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS06990 diaminopimelate decarboxylase no data 30 90
  Ralstonia solanacearum UW163 UW163_RS06625 diaminopimelate decarboxylase no data 30 90
  Ralstonia solanacearum GMI1000 RS_RS14930 diaminopimelate decarboxylase no data 31 85
  Pseudomonas lactucae CFBP13502 GEMAOFIL_05654 Diaminopimelate decarboxylase strong 31 79
  Pseudomonas sp. SVBP6 COO64_RS01255 lysA diaminopimelate decarboxylase cofit 33 79
  Caulobacter crescentus NA1000 CCNA_02296 diaminopimelate decarboxylase no data 32 84
  Caulobacter crescentus NA1000 Δfur CCNA_02296 diaminopimelate decarboxylase no data 32 84
  Pseudomonas protegens RBAN4 FABNJH_30325 lysA diaminopimelate decarboxylase insig. 32 84
  Ralstonia sp. UNC404CL21Col ABZR87_RS02640 diaminopimelate decarboxylase strong 31 85
  Pseudomonas sp. RS175 PFR28_04375 Diaminopimelate decarboxylase no data 31 79
  Paraburkholderia sabiae LMG 24235 QEN71_RS28080 diaminopimelate decarboxylase strong 31 88
  Xanthobacter sp. DMC5 GFF3837 Diaminopimelate decarboxylase no data 31 87
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) no data 31 79
  Paraburkholderia graminis OAS925 ABIE53_003749 diaminopimelate decarboxylase strong 29 92
  Bacteroides thetaiotaomicron VPI-5482 BT1374 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) strong 29 88
  Pseudomonas simiae WCS417 PS417_27580 diaminopimelate decarboxylase no data 31 79
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05606 diaminopimelate decarboxylase no data 30 92
  Bacteroides stercoris CC31F HMPREF1181_RS11050 diaminopimelate decarboxylase strong 27 88
  Pseudomonas orientalis W4I3 QF045_RS01945 diaminopimelate decarboxylase strong 31 79
  Pseudomonas stutzeri RCH2 Psest_3764 diaminopimelate decarboxylase no data 33 79
  Pseudomonas fluorescens FW300-N2E3 AO353_09035 diaminopimelate decarboxylase no data 32 79
  Pseudomonas fluorescens SBW25 PFLU_RS29265 diaminopimelate decarboxylase cofit 31 79
  Pseudomonas fluorescens SBW25-INTG PFLU_RS29265 diaminopimelate decarboxylase no data 31 79
  Rhodanobacter denitrificans MT42 LRK55_RS11215 diaminopimelate decarboxylase insig. 31 88
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS17040 diaminopimelate decarboxylase insig. 30 85
  Acinetobacter baumannii LAC-4 RR41_RS04435 diaminopimelate decarboxylase sig. 28 88
  Phocaeicola dorei CL03T12C01 ABI39_RS19950 diaminopimelate decarboxylase strong 28 88
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS06195 diaminopimelate decarboxylase strong 28 88
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS11485 diaminopimelate decarboxylase insig. 31 88
  Burkholderia phytofirmans PsJN BPHYT_RS17930 diaminopimelate decarboxylase insig. 30 92
  Pseudomonas syringae pv. syringae B728a Psyr_0182 diaminopimelate decarboxylase no data 31 85
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0182 diaminopimelate decarboxylase no data 31 85
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS12545 diaminopimelate decarboxylase strong 29 85
  Acinetobacter radioresistens SK82 MPMX26_02232 Diaminopimelate decarboxylase strong 28 88
  Variovorax sp. OAS795 ABID97_RS23305 diaminopimelate decarboxylase no data 30 88
  Pseudomonas aeruginosa MRSN321 DY961_RS12270 lysA;go_function=diaminopimelate diaminopimelate decarboxylase strong 33 85
  Pseudomonas aeruginosa PUPa3 DQ20_RS49855 lysA;go_function=diaminopimelate diaminopimelate decarboxylase strong 33 85
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2051 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) strong 28 95
  Desulfovibrio vulgaris Miyazaki F DvMF_0353 diaminopimelate decarboxylase (RefSeq) sig. 28 92
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS10180 diaminopimelate decarboxylase no data 28 84
  Rhodopseudomonas palustris CGA009 TX73_024635 diaminopimelate decarboxylase no data 29 84
  Pseudomonas aeruginosa PA14 IKLFDK_27065 diaminopimelate decarboxylase strong 32 85
  Pseudomonas sp. S08-1 OH686_13800 diaminopimelate decarboxylase cofit 32 85
  Variovorax sp. SCN45 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) no data 30 88
  Phaeobacter inhibens DSM 17395 PGA1_c03470 diaminopimelate decarboxylase LysA no data 28 84
  Rhodospirillum rubrum S1H Rru_A0396 Diaminopimelate decarboxylase (NCBI) no data 30 85
  Lysobacter sp. OAE881 ABIE51_RS13675 diaminopimelate decarboxylase insig. 28 90
  Sinorhizobium meliloti 1021 SMc00723 diaminopimelate DAP decarboxylase no data 28 84
  Bosea sp. OAE506 ABIE41_RS08740 diaminopimelate decarboxylase no data 27 85
  Rhizobium sp. OAE497 ABIE40_RS17530 diaminopimelate decarboxylase strong 28 84
  Sphingobium sp. HT1-2 GFF3795 Diaminopimelate decarboxylase (EC 4.1.1.20) strong 29 89
  Agrobacterium fabrum C58 Atu3601 diaminopimelate decarboxylase no data 27 84
  Castellaniella sp019104865 MT123 ABCV34_RS12685 diaminopimelate decarboxylase no data 30 79
  Desulfovibrio vulgaris Hildenborough JW710 DVU1647 lysA-1 diaminopimelate decarboxylase (TIGR) insig. 27 93
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS09650 diaminopimelate decarboxylase strong 25 84
  Azospirillum brasilense Sp245 AZOBR_RS16945 diaminopimelate decarboxylase no data 27 85
  Magnetospirillum magneticum AMB-1 AMB_RS22725 diaminopimelate decarboxylase no data 25 89
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS12130 diaminopimelate decarboxylase insig. 30 84
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS19560 aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) (from data) strong 27 85
  Azospirillum sp. SherDot2 MPMX19_05819 Diaminopimelate decarboxylase no data 27 84
  Methanococcus maripaludis S2 MMP_RS06180 diaminopimelate decarboxylase no data 23 80
  Methanococcus maripaludis JJ MMJJ_RS08170 diaminopimelate decarboxylase insig. 24 80
  Rhodanobacter sp. FW510-T8 OKGIIK_02120 lysA bifunctional aspartate kinase/diaminopimelate decarboxylase strong 27 88
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS12625 bifunctional aspartate kinase/diaminopimelate decarboxylase strong 27 85
  Rhodanobacter denitrificans MT42 LRK55_RS12365 bifunctional aspartate kinase/diaminopimelate decarboxylase cofit 27 85
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS15945 bifunctional aspartate kinase/diaminopimelate decarboxylase strong 26 88
  Kangiella aquimarina DSM 16071 B158DRAFT_1161 aspartate kinase (EC 2.7.2.4) insig. 23 86
  Serratia liquefaciens MT49 IAI46_20520 diaminopimelate decarboxylase insig. 29 58
  Mycobacterium tuberculosis H37Rv Rv1293 Diaminopimelate decarboxylase LysA (DAP decarboxylase) no data 28 89
  Cellulophaga baltica 18 M666_RS19040 diaminopimelate decarboxylase cofit 23 92
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS04130 lysA diaminopimelate decarboxylase strong 29 59
  Rahnella sp. WP5 EX31_RS13275 diaminopimelate decarboxylase strong 26 80
  Pseudomonas sp. SVBP6 COO64_RS08705 lysA diaminopimelate decarboxylase insig. 29 79
  Desulfovibrio vulgaris Miyazaki F DvMF_1010 diaminopimelate decarboxylase (RefSeq) insig. 25 90
  Escherichia coli ECRC62 BNILDI_10310 lysA diaminopimelate decarboxylase strong 28 90
  Escherichia fergusonii Becca EFB2_01045 Diaminopimelate decarboxylase insig. 28 90
  Escherichia coli ECOR38 HEPCGN_19565 lysA diaminopimelate decarboxylase strong 28 90
  Escherichia coli Nissle 1917 ECOLIN_RS15930 diaminopimelate decarboxylase strong 28 90
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1727.1 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) sig. 24 85
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1295 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) strong 23 89
  Dickeya dadantii 3937 DDA3937_RS17425 diaminopimelate decarboxylase strong 28 58
  Escherichia coli BL21 ECD_02686 diaminopimelate decarboxylase, PLP-binding strong 28 90
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00891 Diaminopimelate decarboxylase insig. 28 90
  Escherichia coli BW25113 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) strong 28 90
  Synechococcus elongatus PCC 7942 Synpcc7942_0262 lysA diaminopimelate decarboxylase no data 27 88
  Escherichia coli ECRC99 KEDOAH_08185 lysA diaminopimelate decarboxylase no data 27 90
  Pantoea sp. MT58 IAI47_03860 diaminopimelate decarboxylase strong 26 91
  Escherichia coli ECRC100 OKFHMN_19945 lysA diaminopimelate decarboxylase strong 28 58
  Escherichia coli ECRC101 MCAODC_10470 lysA diaminopimelate decarboxylase strong 28 58
  Escherichia coli ECRC102 NIAGMN_17715 lysA diaminopimelate decarboxylase strong 28 58
  Pectobacterium carotovorum WPP14 HER17_RS03710 diaminopimelate decarboxylase strong 27 58
  Escherichia coli ECOR27 NOLOHH_11830 lysA diaminopimelate decarboxylase strong 27 90
  Desulfovibrio vulgaris Hildenborough JW710 DVU2566 lysA-2 diaminopimelate decarboxylase (TIGR) insig. 27 93
  Escherichia coli ECRC98 JDDGAC_23610 lysA diaminopimelate decarboxylase cofit 28 58
  Pseudomonas sp. BP01 JOY50_RS22195 lysA diaminopimelate decarboxylase insig. 28 63
  Dickeya dianthicola ME23 DZA65_RS18550 diaminopimelate decarboxylase strong 28 58
  Dickeya dianthicola 67-19 HGI48_RS17485 diaminopimelate decarboxylase strong 28 58
  Erwinia amylovora T8 OLJFJH_08880 diaminopimelate decarboxylase strong 27 58
  Lysobacter sp. OAE881 ABIE51_RS15655 bifunctional aspartate kinase/diaminopimelate decarboxylase no data 24 86
  Synechocystis sp000284455 PCC 6803 SGL_RS16710 diaminopimelate decarboxylase no data 22 88
  Klebsiella pneumoniae MKP103 KDGMDA_03935 diaminopimelate decarboxylase insig. 26 95
  Klebsiella pneumoniae MRSN742743 KFA93_RS17850 lysA;go_function=diaminopimelate diaminopimelate decarboxylase sig. 26 95
  Desulfovibrio vulgaris Miyazaki F DvMF_0664 Orn/DAP/Arg decarboxylase 2 (RefSeq) sig. 28 87
  Pseudomonas putida KT2440 PP_2077 diaminopimelate decarboxylase sig. 29 63
  Enterobacter asburiae PDN3 EX28DRAFT_2916 diaminopimelate decarboxylase strong 27 89
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1323 Diaminopimelate decarboxylase (EC 4.1.1.20) insig. 27 90
  Enterobacter sp. TBS_079 MPMX20_03705 Diaminopimelate decarboxylase strong 27 59
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_17035 lysA diaminopimelate decarboxylase strong 26 93
  Erwinia tracheiphila SCR3 LU632_RS06040 lysA diaminopimelate decarboxylase strong 26 93
  Burkholderia phytofirmans PsJN BPHYT_RS35090 diaminopimelate decarboxylase insig. 25 89
  Klebsiella michiganensis M5al BWI76_RS23360 diaminopimelate decarboxylase strong 25 91
  Acidovorax sp. GW101-3H11 Ac3H11_3862 Diaminopimelate decarboxylase (EC 4.1.1.20) no data 26 88
  Pseudomonas protegens RBAN4 FABNJH_12140 lysA diaminopimelate decarboxylase insig. 26 58
  Phaeobacter inhibens DSM 17395 PGA1_c03800 putative lysine/ornithine decarboxylase strong 26 91
  Rhodopseudomonas palustris CGA009 TX73_004485 type III PLP-dependent enzyme sig. 25 93
  Xanthobacter sp. DMC5 GFF4005 Lysine/ornithine decarboxylase sig. 25 89
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS06345 diaminopimelate decarboxylase cofit 22 88
  Agrobacterium fabrum C58 Atu3196 ornithine decarboxylase no data 26 86
  Bosea sp. OAE506 ABIE41_RS08335 type III PLP-dependent enzyme no data 24 89
  Pseudomonas fluorescens GW456-L13 PfGW456L13_5067 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) strong 23 94
  Bifidobacterium breve UCC2003 BBR_RS19555 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) strong 27 48
  Pseudomonas fluorescens FW300-N2E3 AO353_05445 ornithine decarboxylase insig. 22 94
  Pseudomonas sp. SVBP6 COO64_RS04020 type III PLP-dependent enzyme insig. 23 87
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3334 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) sig. 23 94
  Azospirillum brasilense Sp245 AZOBR_RS00105 ornithine decarboxylase strong 25 90
  Pseudomonas syringae pv. syringae B728a Psyr_4247 ornithine decarboxylase insig. 22 83
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4247 ornithine decarboxylase insig. 22 83
  Pseudomonas putida KT2440 PP_0567 Biosynthetic arginine decarboxylase strong 25 58
  Pseudomonas putida KT2440 PP_0864 ornithine decarboxylase sig. 23 87
  Pseudomonas sp. SVBP6 COO64_RS18405 speA arginine decarboxylase insig. 24 58
  Azospirillum sp. SherDot2 MPMX19_00433 Lysine/ornithine decarboxylase insig. 25 69
  Pseudomonas sp. BP01 JOY50_RS23170 speA arginine decarboxylase insig. 25 58
  Rhizobium sp. OAE497 ABIE40_RS16685 ornithine/lysine decarboxylase no data 26 86
  Pseudomonas aeruginosa MRSN321 DY961_RS09970 speA;go_function=arginine arginine decarboxylase sig. 25 58
  Pseudomonas aeruginosa PA14 IKLFDK_29370 arginine decarboxylase strong 25 58
  Pseudomonas aeruginosa PUPa3 DQ20_RS52080 speA;go_function=arginine arginine decarboxylase sig. 25 58
  Pseudomonas protegens RBAN4 FABNJH_04505 lysA Diaminopimelate decarboxylase insig. 22 87
  Dinoroseobacter shibae DFL-12 Dshi_1375 Ornithine decarboxylase (RefSeq) insig. 24 87
  Rhodospirillum rubrum S1H Rru_A1693 Orn/DAP/Arg decarboxylase 2 (NCBI) insig. 23 86
  Pseudomonas fluorescens FW300-N2C3 AO356_28785 decarboxylase insig. 30 42
  Pseudomonas stutzeri RCH2 Psest_3366 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) sig. 22 65
  Pseudomonas syringae pv. syringae B728a Psyr_4381 arginine decarboxylase cofit 23 58
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4381 arginine decarboxylase sig. 23 58
  Sinorhizobium meliloti 1021 SMc02983 ornithine, DAP, or arginine decarboxylase strong 26 86