Homologs of vacB from Shewanella oneidensis MR-1

vacB: ribonuclease R (NCBI ptt file)
SEED: 3'-to-5' exoribonuclease RNase R
KEGG: ribonuclease R

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella oneidensis MR-1 SO3935 vacB ribonuclease R (NCBI ptt file) strong 100 100
o Shewanella sp. ANA-3 Shewana3_0697 RNAse R (RefSeq) strong 97 100
o Shewanella loihica PV-4 Shew_3289 ribonuclease R (RefSeq) strong 81 99
o Shewanella amazonensis SB2B Sama_3067 exoribonuclease II (RefSeq) strong 81 97
o Vibrio cholerae E7946 ATCC 55056 CSW01_13155 ribonuclease R cofit 57 99
o Rahnella sp. WP5 EX31_RS08785 ribonuclease R insig. 58 96
o Pectobacterium carotovorum WPP14 HER17_RS03835 ribonuclease R cofit 57 99
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 strong 60 93
o Enterobacter asburiae PDN3 EX28DRAFT_3376 ribonuclease R strong 57 99
o Klebsiella michiganensis M5al BWI76_RS02575 exoribonuclease R sig. 57 100
o Enterobacter sp. TBS_079 MPMX20_00460 Ribonuclease R sig. 61 90
o Escherichia coli Nissle 1917 ECOLIN_RS24265 ribonuclease R cofit 61 90
o Escherichia fergusonii Becca EFB2_04356 Ribonuclease R insig. 61 90
o Escherichia coli ECRC101 MCAODC_02735 rnr ribonuclease R insig. 61 90
o Escherichia coli ECRC102 NIAGMN_10070 rnr ribonuclease R insig. 61 90
o Escherichia coli ECRC98 JDDGAC_15860 rnr ribonuclease R no data 61 90
o Escherichia coli ECRC99 KEDOAH_15935 rnr ribonuclease R no data 61 90
o Escherichia coli BL21 ECD_04046 exoribonuclease R, RNase R insig. 61 90
o Escherichia coli BW25113 b4179 vacB putative enzyme (VIMSS) strong 61 90
o Escherichia coli ECRC101 OKFHMN_12220 rnr ribonuclease R insig. 61 90
o Escherichia coli ECOR27 NOLOHH_04485 rnr ribonuclease R cofit 61 90
o Escherichia coli ECRC62 BNILDI_07005 rnr ribonuclease R insig. 61 90
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03863 Ribonuclease R cofit 61 90
o Escherichia coli ECOR38 HEPCGN_10450 rnr ribonuclease R cofit 60 90
o Dickeya dianthicola ME23 DZA65_RS18405 ribonuclease R insig. 57 99
o Dickeya dianthicola 67-19 HGI48_RS17315 ribonuclease R cofit 57 99
o Serratia liquefaciens MT49 IAI46_01660 ribonuclease R insig. 56 98
o Erwinia tracheiphila SCR3 LU632_RS21750 rnr ribonuclease R cofit 56 100
o Dickeya dadantii 3937 DDA3937_RS17260 ribonuclease R sig. 59 95
o Pantoea sp. MT58 IAI47_02625 ribonuclease R sig. 54 100
o Alteromonas macleodii MIT1002 MIT1002_03606 Ribonuclease R cofit 56 92
o Pseudomonas sp. RS175 PFR28_05130 Ribonuclease R strong 49 99
o Pseudomonas stutzeri RCH2 Psest_0691 ribonuclease R strong 49 100
o Kangiella aquimarina DSM 16071 B158DRAFT_1989 ribonuclease R cofit 51 96
o Pseudomonas sp. S08-1 OH686_15910 ribonuclease R cofit 50 97
o Pseudomonas fluorescens FW300-N2C3 AO356_08610 exoribonuclease R strong 50 99
o Pseudomonas fluorescens FW300-N2E3 AO353_13200 exoribonuclease R strong 48 99
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R strong 49 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_144 3'-to-5' exoribonuclease RNase R strong 49 100
o Pseudomonas syringae pv. syringae B728a Psyr_0579 RNAse R strong 48 99
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0579 RNAse R strong 48 99
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R strong 50 99
o Pseudomonas simiae WCS417 PS417_02555 exoribonuclease R strong 48 99
o Pseudomonas putida KT2440 PP_4880 exoribonuclease R strong 48 99
o Pseudomonas fluorescens SBW25 PFLU_RS02625 ribonuclease R cofit 52 89
o Pseudomonas fluorescens SBW25-INTG PFLU_RS02625 ribonuclease R strong 52 89
o Dechlorosoma suillum PS Dsui_3128 ribonuclease R cofit 51 90
o Cupriavidus basilensis FW507-4G11 RR42_RS13065 ribonuclease R strong 49 90
o Marinobacter adhaerens HP15 HP15_622 exoribonuclease R strong 52 84
o Ralstonia solanacearum PSI07 RPSI07_RS18030 ribonuclease R strong 47 92
o Ralstonia solanacearum GMI1000 RS_RS06155 ribonuclease R strong 47 92
o Ralstonia sp. UNC404CL21Col ABZR87_RS10985 ribonuclease R sig. 45 98
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS15345 ribonuclease R strong 49 88
o Ralstonia solanacearum UW163 UW163_RS12810 ribonuclease R insig. 49 88
o Paraburkholderia graminis OAS925 ABIE53_001940 ribonuclease R strong 46 99
o Paraburkholderia sabiae LMG 24235 QEN71_RS22925 ribonuclease R strong 50 89
o Burkholderia phytofirmans PsJN BPHYT_RS08455 ribonuclease R sig. 48 92
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00712 RNAse R strong 46 99
o Herbaspirillum seropedicae SmR1 HSERO_RS09290 ribonuclease R strong 48 89
o Rhodanobacter sp. FW510-T8 OKGIIK_06755 rnr ribonuclease R strong 48 90
  Rhodanobacter denitrificans MT42 LRK55_RS00235 ribonuclease R strong 48 90
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS00495 ribonuclease R strong 48 90
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS08270 ribonuclease R strong 48 89
o Castellaniella sp019104865 MT123 ABCV34_RS06625 ribonuclease R cofit 47 88
o Acidovorax sp. GW101-3H11 Ac3H11_412 3'-to-5' exoribonuclease RNase R strong 46 89
o Variovorax sp. SCN45 GFF399 3'-to-5' exoribonuclease RNase R cofit 45 90
o Variovorax sp. OAS795 ABID97_RS17200 ribonuclease R strong 45 88
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4921 3'-to-5' exoribonuclease RNase R cofit 48 82
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3370.1 3'-to-5' exoribonuclease RNase R strong 44 92
o Lysobacter sp. OAE881 ABIE51_RS07475 ribonuclease R cofit 44 92
o Acinetobacter radioresistens SK82 MPMX26_02684 Ribonuclease R cofit 43 100
  Desulfovibrio vulgaris Miyazaki F DvMF_0925 ribonuclease R (RefSeq) sig. 36 94
o Desulfovibrio vulgaris Hildenborough JW710 DVU2467 rnr ribonuclease R (TIGR) insig. 36 89
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05885 ribonuclease R strong 34 79
o Azospirillum brasilense Sp245 AZOBR_RS16165 ribonuclease R insig. 35 86
o Magnetospirillum magneticum AMB-1 AMB_RS04465 ribonuclease R cofit 35 89
o Rhizobium sp. OAE497 ABIE40_RS07350 ribonuclease R insig. 37 86
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS04270 ribonuclease R strong 32 87
o Rhodospirillum rubrum S1H Rru_A3203 ribonuclease R (NCBI) cofit 35 97
o Phaeobacter inhibens DSM 17395 PGA1_c36430 putative ribonuclease R strong 35 89
o Agrobacterium fabrum C58 Atu1303 exoribonuclease sig. 35 91
  Rhodopseudomonas palustris CGA009 TX73_016160 ribonuclease R insig. 38 79
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS08325 ribonuclease R cofit 39 71
o Sinorhizobium meliloti 1021 SMc01365 exoribonuclease II protein sig. 36 86
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS10530 ribonuclease R strong 32 85
o Azospirillum sp. SherDot2 MPMX19_01812 Ribonuclease R insig. 35 86
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_17355 ribonuclease R strong 30 88
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0669 ribonuclease R no data 33 80
o Phocaeicola dorei CL03T12C01 ABI39_RS06100 ribonuclease R sig. 32 80
  Caulobacter crescentus NA1000 CCNA_02537 ribonuclease R strong 37 73
  Caulobacter crescentus NA1000 Δfur CCNA_02537 ribonuclease R cofit 37 73
  Bacteroides stercoris CC31F HMPREF1181_RS01550 ribonuclease R insig. 32 79
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS10970 ribonuclease R strong 31 80
o Sphingomonas koreensis DSMZ 15582 Ga0059261_3266 ribonuclease R strong 34 92
  Bacteroides ovatus ATCC 8483 BACOVA_02736 ribonuclease R strong 31 79
  Bacteroides thetaiotaomicron VPI-5482 BT3077 ribonuclease R (NCBI ptt file) insig. 31 79
o Dinoroseobacter shibae DFL-12 Dshi_0015 ribonuclease R (RefSeq) insig. 36 86
o Fusobacterium nucleatum SB010 HUW76_06085 ribonuclease R cofit 31 82
  Bosea sp. OAE506 ABIE41_RS18140 ribonuclease R insig. 36 71
  Marinobacter adhaerens HP15 HP15_3552 exoribonuclease R strong 30 79