Homologs of radA from Shewanella oneidensis MR-1

radA: DNA repair protein RadA (NCBI ptt file)
SEED: DNA repair protein RadA
KEGG: DNA repair protein RadA/Sms

189 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella oneidensis MR-1 SO1226 radA DNA repair protein RadA (NCBI ptt file) strong 100 100
o Shewanella sp. ANA-3 Shewana3_1049 DNA repair protein RadA (RefSeq) insig. 99 100
o Shewanella amazonensis SB2B Sama_0981 DNA repair protein RadA (RefSeq) strong 91 100
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1057 DNA repair protein RadA insig. 78 98
o Escherichia coli ECOR27 NOLOHH_03520 radA DNA repair protein RadA insig. 78 98
o Escherichia coli ECRC100 OKFHMN_11195 radA DNA repair protein RadA cofit 78 98
o Escherichia coli ECRC101 MCAODC_01710 radA DNA repair protein RadA insig. 78 98
o Escherichia coli ECRC102 NIAGMN_09045 radA DNA repair protein RadA cofit 78 98
o Escherichia coli ECRC62 BNILDI_08075 radA DNA repair protein RadA insig. 78 98
o Escherichia coli ECRC98 JDDGAC_14790 radA DNA repair protein RadA insig. 78 98
o Escherichia coli ECRC99 KEDOAH_16960 radA DNA repair protein RadA no data 78 98
o Escherichia coli BL21 ECD_04265 DNA repair protein strong 77 99
o Escherichia fergusonii Becca EFB2_04057 DNA repair protein RadA insig. 77 99
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03672 DNA repair protein RadA insig. 77 99
o Escherichia coli Nissle 1917 ECOLIN_RS25190 DNA repair protein RadA insig. 77 99
o Escherichia coli BW25113 b4389 radA predicted repair protein (NCBI) strong 77 99
o Klebsiella pneumoniae MKP103 KDGMDA_12435 DNA repair protein RadA sig. 77 99
o Klebsiella pneumoniae MRSN742743 KFA93_RS10955 radA;go_function=damaged DNA repair protein RadA insig. 77 99
o Escherichia coli ECOR38 HEPCGN_09195 radA DNA repair protein RadA insig. 77 98
o Enterobacter sp. TBS_079 MPMX20_00694 DNA repair protein RadA insig. 77 99
o Serratia liquefaciens MT49 IAI46_02945 DNA repair protein RadA insig. 76 100
o Klebsiella michiganensis M5al BWI76_RS04165 DNA repair protein RadA insig. 77 99
o Enterobacter asburiae PDN3 EX28DRAFT_3597 DNA repair protein RadA insig. 77 99
o Erwinia amylovora T8 OLJFJH_01590 DNA repair protein RadA insig. 77 98
o Rahnella sp. WP5 EX31_RS04030 DNA repair protein RadA insig. 76 99
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_06365 radA DNA repair protein RadA cofit 76 99
o Erwinia tracheiphila SCR3 LU632_RS02550 radA DNA repair protein RadA insig. 75 100
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS16655 radA DNA repair protein RadA cofit 75 99
o Pantoea sp. MT58 IAI47_16345 DNA repair protein RadA insig. 75 99
o Pectobacterium carotovorum WPP14 HER17_RS19085 DNA repair protein RadA cofit 76 99
o Alteromonas macleodii MIT1002 MIT1002_02706 Lon protease 2 insig. 72 100
o Dickeya dadantii 3937 DDA3937_RS02420 DNA repair protein RadA insig. 77 99
o Dickeya dianthicola ME23 DZA65_RS02485 DNA repair protein RadA insig. 76 99
o Dickeya dianthicola 67-19 HGI48_RS02380 DNA repair protein RadA insig. 76 99
o Vibrio cholerae E7946 ATCC 55056 CSW01_11870 DNA repair protein RadA cofit 73 100
o Marinobacter adhaerens HP15 HP15_487 DNA repair protein RadA strong 71 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_05014 DNA repair protein RadA cofit 63 100
o Pseudomonas fluorescens SBW25 PFLU_RS26230 DNA repair protein RadA insig. 62 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS26230 DNA repair protein RadA insig. 62 100
o Pseudomonas sp. RS175 PFR28_03792 DNA repair protein RadA insig. 62 100
o Pseudomonas orientalis W4I3 QF045_RS26600 DNA repair protein RadA insig. 63 100
o Pseudomonas simiae WCS417 PS417_24305 DNA repair protein RadA strong 62 100
o Pseudomonas fluorescens FW300-N2C3 AO356_15680 DNA repair protein RadA strong 62 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5076 DNA repair protein RadA strong 62 100
o Pseudomonas sp. DMC3 GFF3954 DNA repair protein RadA cofit 62 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1442 DNA repair protein RadA insig. 62 100
o Pseudomonas protegens RBAN4 FABNJH_27060 radA DNA repair protein RadA insig. 62 100
o Pseudomonas fluorescens FW300-N2E3 AO353_13980 DNA repair protein RadA strong 62 100
o Pseudomonas syringae pv. syringae B728a Psyr_4275 DNA replication and repair protein RadA insig. 62 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4275 DNA replication and repair protein RadA insig. 62 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2768 DNA repair protein RadA sig. 61 100
o Pseudomonas sp. S08-1 OH686_16185 DNA repair protein RadA insig. 61 100
o Pseudomonas segetis P6 ACVTMO_RS19740 radA DNA repair protein RadA insig. 62 100
o Pseudomonas sp. SVBP6 COO64_RS02920 radA DNA repair protein RadA insig. 61 100
o Pseudomonas stutzeri RCH2 Psest_3401 DNA repair protein RadA strong 61 100
o Pseudomonas aeruginosa MRSN321 DY961_RS23385 radA;go_function=ATP DNA repair protein RadA sig. 61 100
o Pseudomonas aeruginosa PA14 IKLFDK_00465 DNA repair protein RadA strong 61 100
o Pseudomonas aeruginosa PUPa3 DQ20_RS55850 radA;go_function=ATP DNA repair protein RadA sig. 61 100
o Pseudomonas sp. BP01 JOY50_RS15685 radA DNA repair protein RadA insig. 60 100
o Pseudomonas putida KT2440 PP_4644 DNA repair enzyme insig. 60 100
o Kangiella aquimarina DSM 16071 B158DRAFT_0877 DNA replication and repair protein RadA strong 60 100
o Acinetobacter radioresistens SK82 MPMX26_02235 DNA repair protein RadA insig. 61 99
o Acinetobacter baumannii LAC-4 RR41_RS04415 DNA repair protein RadA insig. 59 99
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3812.1 DNA repair protein RadA insig. 59 100
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS07420 DNA repair protein RadA insig. 60 100
o Rhodanobacter sp. FW510-T8 OKGIIK_09580 radA DNA repair protein RadA sig. 60 100
o Rhodanobacter denitrificans MT42 LRK55_RS02280 DNA repair protein RadA cofit 60 100
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS02525 DNA repair protein RadA insig. 60 100
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS08845 DNA repair protein RadA strong 61 100
o Lysobacter sp. OAE881 ABIE51_RS07685 DNA repair protein RadA insig. 58 99
o Methylophilus sp. DMC18 GFF1046 DNA repair protein RadA insig. 55 100
o Paraburkholderia sabiae LMG 24235 QEN71_RS06320 DNA repair protein RadA cofit 56 100
o Ralstonia sp. UNC404CL21Col ABZR87_RS11670 DNA repair protein RadA insig. 55 100
o Paraburkholderia graminis OAS925 ABIE53_002526 DNA repair protein RadA/Sms sig. 56 100
o Burkholderia phytofirmans PsJN BPHYT_RS12235 DNA repair protein RadA strong 56 100
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00590 DNA replication and repair protein RadA insig. 56 100
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS00210 DNA repair protein RadA insig. 56 100
o Ralstonia solanacearum UW163 UW163_RS13540 DNA repair protein RadA insig. 56 100
o Variovorax sp. OAS795 ABID97_RS03770 DNA repair protein RadA insig. 54 100
o Variovorax sp. SCN45 GFF5087 DNA repair protein RadA insig. 54 100
o Cupriavidus basilensis FW507-4G11 RR42_RS12030 DNA repair protein RadA no data 56 100
o Ralstonia solanacearum GMI1000 RS_RS06880 DNA repair protein RadA strong 56 100
o Dechlorosoma suillum PS Dsui_2413 DNA repair protein RadA cofit 56 100
o Ralstonia solanacearum PSI07 RPSI07_RS17270 DNA repair protein RadA strong 55 100
o Acidovorax sp. GW101-3H11 Ac3H11_3371 DNA repair protein RadA strong 55 100
o Herbaspirillum seropedicae SmR1 HSERO_RS10745 DNA repair protein RadA strong 54 100
o Castellaniella sp019104865 MT123 ABCV34_RS02345 DNA repair protein RadA sig. 53 99
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1833 DNA repair protein RadA insig. 53 100
o Azospirillum brasilense Sp245 AZOBR_RS08320 DNA repair protein RadA strong 49 99
o Azospirillum sp. SherDot2 MPMX19_00904 DNA repair protein RadA sig. 49 96
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1031 DNA repair protein RadA strong 46 100
o Synechocystis sp000284455 PCC 6803 SGL_RS11815 DNA repair protein RadA insig. 44 99
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS14715 DNA repair protein RadA sig. 44 100
o Bacteroides stercoris CC31F HMPREF1181_RS00075 DNA repair protein RadA insig. 44 100
o Bacteroides thetaiotaomicron VPI-5482 BT2406 putative DNA repair protein (NCBI ptt file) strong 44 100
o Bacteroides ovatus ATCC 8483 BACOVA_03019 DNA repair protein RadA cofit 43 100
o Rhodopseudomonas palustris CGA009 TX73_015980 DNA repair protein RadA insig. 47 98
o Bosea sp. OAE506 ABIE41_RS17800 DNA repair protein RadA strong 49 94
o Phocaeicola dorei CL03T12C01 ABI39_RS10420 DNA repair protein RadA insig. 44 100
o Xanthobacter sp. DMC5 GFF1870 DNA repair protein RadA insig. 48 100
o Rhizobium sp. OAE497 ABIE40_RS06280 DNA repair protein RadA insig. 45 95
o Sinorhizobium meliloti 1021 SMc00556 DNA repair protein RadA strong 45 96
o Phaeobacter inhibens DSM 17395 PGA1_c10840 DNA repair protein RadA strong 49 93
o Magnetospirillum magneticum AMB-1 AMB_RS10555 DNA repair protein RadA insig. 48 94
o Caulobacter crescentus NA1000 CCNA_01732 DNA repair protein RadA strong 45 100
o Caulobacter crescentus NA1000 Δfur CCNA_01732 DNA repair protein RadA cofit 45 100
o Agrobacterium fabrum C58 Atu1077 DNA repair protein strong 45 95
o Synechococcus elongatus PCC 7942 Synpcc7942_1452 radA DNA repair protein RadA sig. 45 99
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS22660 DNA repair protein RadA sig. 44 99
o Rhodospirillum rubrum S1H Rru_A0406 DNA repair protein RadA (NCBI) strong 47 94
o Dinoroseobacter shibae DFL-12 Dshi_2129 DNA repair protein RadA (RefSeq) strong 46 94
o Sphingobium sp. HT1-2 GFF1895 DNA repair protein RadA cofit 48 94
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_17125 DNA repair protein RadA cofit 45 95
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS08395 DNA repair protein RadA cofit 43 100
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS03745 DNA repair protein RadA insig. 44 100
o Shewanella loihica PV-4 Shew_2807 DNA repair protein RadA (RefSeq) strong 42 100
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS20495 DNA repair protein RadA insig. 41 95
o Cellulophaga baltica 18 M666_RS03595 DNA repair protein RadA insig. 42 95
o Sphingomonas koreensis DSMZ 15582 Ga0059261_0751 DNA repair protein RadA strong 47 95
o Bifidobacterium breve UCC2003 BBR_RS18740 DNA repair protein RadA strong 38 100
o Fusobacterium nucleatum SB010 HUW76_02270 DNA repair protein RadA strong 39 95
o Desulfovibrio vulgaris Hildenborough JW710 DVU1590 radA DNA repair protein RadA (TIGR) insig. 41 95
o Desulfovibrio vulgaris Miyazaki F DvMF_0471 DNA repair protein RadA (RefSeq) sig. 40 99
o Mycobacterium tuberculosis H37Rv Rv3585 DNA repair protein RadA (DNA repair protein SMS) sig. 39 94
  Rhizobium sp. OAE497 ABIE40_RS28915 ATPase domain-containing protein cofit 43 13
  Methanococcus maripaludis JJ MMJJ_RS08245 ATP-dependent protease LonB no data 28 23
  Methanococcus maripaludis S2 MMP_RS06110 ATP-dependent protease LonB strong 28 23
  Pseudomonas stutzeri RCH2 Psest_1407 RecA-superfamily ATPases implicated in signal transduction sig. 27 33
  Mycobacterium tuberculosis H37Rv Rv0058 Probable replicative DNA helicase DnaB no data 26 60
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1735 Mg chelatase-related protein insig. 29 24
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_03889 circadian clock protein KaiC insig. 29 30
  Paraburkholderia sabiae LMG 24235 QEN71_RS39485 gas vesicle protein GvpD insig. 31 27
  Paraburkholderia graminis OAS925 ABIE53_004941 circadian clock protein KaiC sig. 29 30
  Caulobacter crescentus NA1000 CCNA_02037 ATP-dependent endopeptidase Lon strong 30 22
  Caulobacter crescentus NA1000 Δfur CCNA_02037 ATP-dependent endopeptidase Lon no data 30 22
  Bosea sp. OAE506 ABIE41_RS18050 endopeptidase La no data 30 22
  Desulfovibrio vulgaris Hildenborough JW710 DVU3303 lon ATP-dependent protease La, truncation (TIGR) cofit 34 17
  Rhizobium sp. OAE497 ABIE40_RS27365 ATPase domain-containing protein cofit 46 13
  Synechocystis sp000284455 PCC 6803 SGL_RS08835 circadian clock protein KaiC sig. 28 31
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS16185 endopeptidase La insig. 32 21
  Desulfovibrio vulgaris Hildenborough JW710 DVU1191 lon ATP-dependent protease La, putative (TIGR) strong 31 17
  Rhodopseudomonas palustris CGA009 TX73_000045 circadian clock protein KaiC insig. 29 30
  Pseudomonas sp. RS175 PFR28_01469 Circadian clock protein kinase KaiC sig. 35 17
  Lysobacter sp. OAE881 ABIE51_RS09910 ATPase domain-containing protein insig. 30 30
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4044 ATP-dependent protease La (EC 3.4.21.53) Type I cofit 29 23
  Pseudomonas sp. DMC3 GFF3552 Circadian clock protein kinase KaiC insig. 34 17
  Variovorax sp. OAS795 ABID97_RS10010 ATPase domain-containing protein insig. 33 28
  Desulfovibrio vulgaris Miyazaki F DvMF_3084 ATP-dependent protease La (RefSeq) no data 32 17
  Desulfovibrio vulgaris Hildenborough JW710 DVU1337 lon ATP-dependent protease La (TIGR) strong 31 22
  Shewanella oneidensis MR-1 SO1796 lon ATP-dependent protease La (NCBI ptt file) strong 33 17
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS06460 endopeptidase La no data 29 22
  Vibrio cholerae E7946 ATCC 55056 CSW01_09605 endopeptidase La cofit 27 22
  Azospirillum brasilense Sp245 AZOBR_RS07145 peptidase strong 26 22
  Herbaspirillum seropedicae SmR1 HSERO_RS12905 peptidase no data 28 22
  Xanthobacter sp. DMC5 GFF1156 Lon protease no data 28 22
  Rhizobium sp. OAE497 ABIE40_RS28095 ATPase domain-containing protein insig. 29 31
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00898 ATP-dependent proteinase. Serine peptidase. MEROPS family S16 no data 29 22
  Paraburkholderia graminis OAS925 ABIE53_002117 ATP-dependent Lon protease strong 29 22
  Shewanella amazonensis SB2B Sama_1226 endopeptidase La (RefSeq) strong 30 17
  Burkholderia phytofirmans PsJN BPHYT_RS09460 peptidase no data 29 22
  Variovorax sp. SCN45 GFF1414 Circadian clock protein KaiC insig. 28 32
  Rhizobium sp. OAE497 ABIE40_RS27345 ATPase domain-containing protein insig. 27 31
  Agrobacterium fabrum C58 Atu1261 ATP-dependent protease LA no data 27 22
  Pantoea sp. MT58 IAI47_14645 endopeptidase La no data 26 22
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS14895 lon endopeptidase La no data 26 22
  Sinorhizobium meliloti 1021 SMc01905 ATP-dependent protease LA protein no data 26 22
  Shewanella sp. ANA-3 Shewana3_2659 Lon-A peptidase (RefSeq) no data 32 17
  Sphingobium sp. HT1-2 GFF1674 ATP-dependent protease La (EC 3.4.21.53) Type I no data 30 20
  Acinetobacter radioresistens SK82 MPMX26_02299 Lon protease strong 29 23
  Variovorax sp. SCN45 GFF487 ATP-dependent protease La (EC 3.4.21.53) Type I strong 28 22
  Variovorax sp. OAS795 ABID97_RS10010 ATPase domain-containing protein insig. 28 44
  Alteromonas macleodii MIT1002 MIT1002_02757 Lon protease strong 29 21
  Xanthobacter sp. DMC5 GFF2697 Circadian clock protein kinase KaiC insig. 28 43
  Serratia liquefaciens MT49 IAI46_05020 endopeptidase La strong 26 22
  Paraburkholderia sabiae LMG 24235 QEN71_RS18995 ATPase domain-containing protein insig. 42 13
  Shewanella loihica PV-4 Shew_2506 ATP-dependent protease La (RefSeq) no data 32 17
  Ralstonia sp. UNC404CL21Col ABZR87_RS12785 endopeptidase La strong 31 17
  Cellulophaga baltica 18 M666_RS14865 YifB family Mg chelatase-like AAA ATPase insig. 25 31
  Burkholderia phytofirmans PsJN BPHYT_RS32765 circadian clock protein KaiC insig. 34 19
  Rhizobium sp. OAE497 ABIE40_RS07100 endopeptidase La no data 25 23
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3195.1 RecA-superfamily ATPases implicated in signal transduction insig. 32 21
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS01340 endopeptidase La no data 28 22
  Ralstonia solanacearum UW163 UW163_RS14650 endopeptidase La no data 28 22
  Rhodospirillum rubrum S1H Rru_A1552 Peptidase S16, ATP-dependent protease La (NCBI) cofit 26 23
  Erwinia amylovora T8 OLJFJH_17960 endopeptidase La strong 25 22
  Paraburkholderia sabiae LMG 24235 QEN71_RS39485 gas vesicle protein GvpD insig. 25 43
  Ralstonia solanacearum PSI07 RPSI07_RS16135 endopeptidase La no data 28 22
  Dickeya dadantii 3937 DDA3937_RS05650 endopeptidase La insig. 26 22
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS19740 YifB family Mg chelatase-like AAA ATPase insig. 26 29