Homologs of GFF7962 from Variovorax sp. SCN45

3'-to-5' exoribonuclease RNase R
SEED: 3'-to-5' exoribonuclease RNase R

206 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Variovorax sp. SCN45 GFF7962 3'-to-5' exoribonuclease RNase R no data 100 100
  Lysobacter sp. OAE881 ABIE51_RS07475 ribonuclease R cofit 87 99
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3370.1 3'-to-5' exoribonuclease RNase R strong 76 100
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS09655 ribonuclease R cofit 66 94
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS08270 ribonuclease R strong 67 90
  Rhodanobacter denitrificans MT42 LRK55_RS00235 ribonuclease R strong 65 94
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS00495 ribonuclease R strong 65 94
  Rhodanobacter sp. FW510-T8 OKGIIK_06755 rnr ribonuclease R strong 71 82
  Pseudomonas syringae pv. syringae B728a Psyr_0579 RNAse R strong 53 86
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0579 RNAse R strong 53 86
  Pseudomonas orientalis W4I3 QF045_RS05605 ribonuclease R strong 53 90
  Pseudomonas sp. S08-1 OH686_15910 ribonuclease R cofit 50 96
  Pseudomonas fluorescens FW300-N2C3 AO356_08610 exoribonuclease R strong 55 82
  Pseudomonas fluorescens SBW25 PFLU_RS02625 ribonuclease R cofit 51 88
  Pseudomonas fluorescens SBW25-INTG PFLU_RS02625 ribonuclease R strong 51 88
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R strong 55 82
  Pseudomonas simiae WCS417 PS417_02555 exoribonuclease R strong 55 82
  Pseudomonas sp. RS175 PFR28_05130 Ribonuclease R strong 54 82
  Pseudomonas stutzeri RCH2 Psest_0691 ribonuclease R strong 55 80
  Pseudomonas sp. BP01 JOY50_RS17320 rnr ribonuclease R insig. 54 82
  Pseudomonas sp. DMC3 GFF3229 Ribonuclease R sig. 54 82
  Pseudomonas fluorescens GW456-L13 PfGW456L13_144 3'-to-5' exoribonuclease RNase R strong 54 82
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R strong 54 82
  Pseudomonas fluorescens FW300-N2E3 AO353_13200 exoribonuclease R strong 54 82
  Pseudomonas lactucae CFBP13502 GEMAOFIL_00747 Ribonuclease R cofit 54 82
  Pseudomonas sp. SVBP6 COO64_RS17955 rnr ribonuclease R insig. 52 90
  Pseudomonas aeruginosa MRSN321 DY961_RS10465 rnr;go_function=RNA ribonuclease R strong 56 80
  Pseudomonas aeruginosa PA14 IKLFDK_28865 ribonuclease R strong 56 80
  Pseudomonas segetis P6 ACVTMO_RS20555 rnr ribonuclease R strong 46 96
  Pseudomonas aeruginosa PUPa3 DQ20_RS51590 rnr;go_function=RNA ribonuclease R strong 57 80
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00712 RNAse R strong 50 92
  Pseudomonas putida KT2440 PP_4880 exoribonuclease R strong 54 80
  Burkholderia phytofirmans PsJN BPHYT_RS08455 ribonuclease R sig. 48 94
  Vibrio cholerae E7946 ATCC 55056 CSW01_13155 ribonuclease R cofit 47 91
  Paraburkholderia graminis OAS925 ABIE53_001940 ribonuclease R strong 47 94
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS11220 ribonuclease R cofit 50 88
  Ralstonia solanacearum PSI07 RPSI07_RS18030 ribonuclease R strong 51 82
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS15345 ribonuclease R strong 51 82
  Ralstonia solanacearum GMI1000 RS_RS06155 ribonuclease R strong 51 82
  Ralstonia solanacearum UW163 UW163_RS12810 ribonuclease R insig. 51 82
  Pantoea sp. MT58 IAI47_02625 ribonuclease R sig. 49 88
  Dechlorosoma suillum PS Dsui_3128 ribonuclease R cofit 46 83
  Cupriavidus basilensis FW507-4G11 RR42_RS13065 ribonuclease R strong 53 82
  Ralstonia sp. UNC404CL21Col ABZR87_RS10985 ribonuclease R sig. 50 82
  Paraburkholderia sabiae LMG 24235 QEN71_RS22925 ribonuclease R strong 51 80
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4921 3'-to-5' exoribonuclease RNase R cofit 42 96
  Escherichia fergusonii Becca EFB2_04356 Ribonuclease R insig. 49 87
  Escherichia coli ECRC100 OKFHMN_12220 rnr ribonuclease R cofit 49 87
  Escherichia coli Nissle 1917 ECOLIN_RS24265 ribonuclease R sig. 49 87
  Escherichia coli ECRC101 MCAODC_02735 rnr ribonuclease R sig. 49 87
  Escherichia coli ECRC102 NIAGMN_10070 rnr ribonuclease R cofit 49 87
  Escherichia coli ECRC98 JDDGAC_15860 rnr ribonuclease R cofit 49 87
  Escherichia coli ECRC99 KEDOAH_15935 rnr ribonuclease R no data 49 87
  Klebsiella pneumoniae MKP103 KDGMDA_11075 ribonuclease R cofit 45 99
  Klebsiella pneumoniae MRSN742743 KFA93_RS21025 rnr;go_function=RNA ribonuclease R strong 45 99
  Escherichia coli BL21 ECD_04046 exoribonuclease R, RNase R insig. 49 87
  Escherichia coli ECOR27 NOLOHH_04485 rnr ribonuclease R insig. 49 87
  Escherichia coli ECOR38 HEPCGN_10450 rnr ribonuclease R cofit 49 87
  Escherichia coli ECRC62 BNILDI_07005 rnr ribonuclease R cofit 49 87
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03863 Ribonuclease R cofit 49 87
  Escherichia coli BW25113 b4179 vacB putative enzyme (VIMSS) strong 49 87
  Acidovorax sp. GW101-3H11 Ac3H11_412 3'-to-5' exoribonuclease RNase R strong 50 82
  Variovorax sp. SCN45 GFF399 3'-to-5' exoribonuclease RNase R cofit 48 82
  Enterobacter sp. TBS_079 MPMX20_00460 Ribonuclease R sig. 48 87
  Variovorax sp. OAS795 ABID97_RS17200 ribonuclease R strong 48 82
  Enterobacter asburiae PDN3 EX28DRAFT_3376 ribonuclease R strong 48 87
  Klebsiella michiganensis M5al BWI76_RS02575 exoribonuclease R sig. 47 87
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 strong 44 99
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_13230 rnr ribonuclease R strong 48 90
  Erwinia tracheiphila SCR3 LU632_RS21750 rnr ribonuclease R strong 48 90
  Methylophilus sp. DMC18 GFF635 Ribonuclease R insig. 47 87
  Shewanella oneidensis MR-1 SO3935 vacB ribonuclease R (NCBI ptt file) strong 45 83
  Shewanella sp. ANA-3 Shewana3_0697 RNAse R (RefSeq) strong 45 83
  Herbaspirillum seropedicae SmR1 HSERO_RS09290 ribonuclease R strong 45 96
  Dickeya dadantii 3937 DDA3937_RS17260 ribonuclease R sig. 46 88
  Dickeya dianthicola ME23 DZA65_RS18405 ribonuclease R insig. 46 88
  Erwinia amylovora T8 OLJFJH_02470 ribonuclease R strong 46 94
  Dickeya dianthicola 67-19 HGI48_RS17315 ribonuclease R cofit 47 87
  Shewanella amazonensis SB2B Sama_3067 exoribonuclease II (RefSeq) strong 46 82
  Serratia liquefaciens MT49 IAI46_01660 ribonuclease R strong 46 94
  Pectobacterium carotovorum WPP14 HER17_RS03835 ribonuclease R cofit 46 88
  Rahnella sp. WP5 EX31_RS08785 ribonuclease R insig. 48 85
  Acinetobacter radioresistens SK82 MPMX26_02684 Ribonuclease R cofit 47 84
  Kangiella aquimarina DSM 16071 B158DRAFT_1989 ribonuclease R cofit 43 99
  Shewanella loihica PV-4 Shew_3289 ribonuclease R (RefSeq) strong 41 89
  Marinobacter adhaerens HP15 HP15_622 exoribonuclease R strong 45 85
  Acinetobacter baumannii LAC-4 RR41_RS02345 ribonuclease R strong 44 78
  Castellaniella sp019104865 MT123 ABCV34_RS06625 ribonuclease R cofit 46 81
  Alteromonas macleodii MIT1002 MIT1002_03606 Ribonuclease R cofit 43 99
  Desulfovibrio vulgaris Hildenborough JW710 DVU2467 rnr ribonuclease R (TIGR) insig. 40 94
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05885 ribonuclease R strong 45 78
  Magnetospirillum magneticum AMB-1 AMB_RS04465 ribonuclease R cofit 39 92
  Azospirillum sp. SherDot2 MPMX19_01812 Ribonuclease R insig. 42 84
  Azospirillum brasilense Sp245 AZOBR_RS16165 ribonuclease R insig. 47 70
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS08325 ribonuclease R cofit 39 92
  Bacteroides stercoris CC31F HMPREF1181_RS01550 ribonuclease R insig. 40 82
  Xanthobacter sp. DMC5 GFF1081 Ribonuclease R insig. 37 96
  Desulfovibrio vulgaris Miyazaki F DvMF_0925 ribonuclease R (RefSeq) sig. 38 84
  Phaeobacter inhibens DSM 17395 PGA1_c36430 putative ribonuclease R strong 37 93
  Phocaeicola dorei CL03T12C01 ABI39_RS06100 ribonuclease R sig. 41 78
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS10970 ribonuclease R strong 41 78
  Bacteroides ovatus ATCC 8483 BACOVA_02736 ribonuclease R strong 39 82
  Bacteroides thetaiotaomicron VPI-5482 BT3077 ribonuclease R (NCBI ptt file) insig. 38 82
  Rhodopseudomonas palustris CGA009 TX73_016160 ribonuclease R insig. 38 82
  Caulobacter crescentus NA1000 CCNA_02537 ribonuclease R strong 37 96
  Caulobacter crescentus NA1000 Δfur CCNA_02537 ribonuclease R cofit 37 96
  Rhizobium sp. OAE497 ABIE40_RS07350 ribonuclease R insig. 39 85
  Cellulophaga baltica 18 M666_RS05085 ribonuclease R no data 38 78
  Sinorhizobium meliloti 1021 SMc01365 exoribonuclease II protein sig. 38 83
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3266 ribonuclease R strong 37 92
  Rhodospirillum rubrum S1H Rru_A3203 ribonuclease R (NCBI) cofit 37 80
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS10530 ribonuclease R strong 33 80
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0669 ribonuclease R no data 35 81
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_17355 ribonuclease R strong 34 79
  Synechococcus elongatus PCC 7942 Synpcc7942_1911 zam Cold shock protein strong 38 87
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS04270 ribonuclease R strong 32 80
  Agrobacterium fabrum C58 Atu1303 exoribonuclease strong 36 83
  Sphingobium sp. HT1-2 GFF3533 '3'-to-5' exoribonuclease RNase R' transl_table=11 cofit 34 99
  Dinoroseobacter shibae DFL-12 Dshi_0015 ribonuclease R (RefSeq) insig. 36 83
  Bosea sp. OAE506 ABIE41_RS18140 ribonuclease R insig. 37 66
  Synechocystis sp000284455 PCC 6803 SGL_RS05500 ribonuclease R strong 34 82
  Methanococcus maripaludis JJ MMJJ_RS02940 DNA-directed RNA polymerase no data 36 51
  Methanococcus maripaludis S2 MMP_RS02335 DNA-directed RNA polymerase no data 36 51
  Klebsiella michiganensis M5al BWI76_RS09780 30S ribosomal protein S1 no data 29 78
  Dickeya dianthicola 67-19 HGI48_RS09695 30S ribosomal protein S1 no data 29 78
  Dickeya dianthicola ME23 DZA65_RS10005 30S ribosomal protein S1 no data 29 78
  Enterobacter asburiae PDN3 EX28DRAFT_2025 ribosomal protein S1 no data 29 78
  Enterobacter sp. TBS_079 MPMX20_01569 30S ribosomal protein S1 no data 29 78
  Klebsiella pneumoniae MKP103 KDGMDA_17980 30S ribosomal protein S1 no data 29 78
  Klebsiella pneumoniae MRSN742743 KFA93_RS00905 rpsA;go_component=ribosome|0005840||IEA;go_function=RNA 30S ribosomal protein S1 no data 29 78
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3668 SSU ribosomal protein S1p no data 29 78
  Serratia liquefaciens MT49 IAI46_08650 30S ribosomal protein S1 no data 29 78
  Dickeya dadantii 3937 DDA3937_RS09685 30S ribosomal protein S1 no data 29 78
  Escherichia coli BL21 ECD_00915 30S ribosomal subunit protein S1 no data 29 78
  Escherichia fergusonii Becca EFB2_03153 30S ribosomal protein S1 no data 29 78
  Escherichia coli ECOR27 NOLOHH_22030 rpsA 30S ribosomal protein S1 no data 29 78
  Escherichia coli ECOR38 HEPCGN_23055 rpsA 30S ribosomal protein S1 no data 29 78
  Escherichia coli ECRC100 OKFHMN_05470 rpsA 30S ribosomal protein S1 no data 29 78
  Escherichia coli ECRC101 MCAODC_24860 rpsA 30S ribosomal protein S1 no data 29 78
  Escherichia coli ECRC102 NIAGMN_03190 rpsA 30S ribosomal protein S1 no data 29 78
  Escherichia coli ECRC62 BNILDI_20285 rpsA 30S ribosomal protein S1 no data 29 78
  Escherichia coli ECRC98 JDDGAC_09080 rpsA 30S ribosomal protein S1 no data 29 78
  Escherichia coli ECRC99 KEDOAH_22265 rpsA 30S ribosomal protein S1 no data 29 78
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02757 30S ribosomal protein S1 no data 29 78
  Escherichia coli Nissle 1917 ECOLIN_RS04825 30S ribosomal protein S1 no data 29 78
  Escherichia coli BW25113 b0911 rpsA 30S ribosomal protein S1 (NCBI) no data 29 78
  Erwinia tracheiphila SCR3 LU632_RS09805 rpsA 30S ribosomal protein S1 no data 29 78
  Pantoea sp. MT58 IAI47_12850 30S ribosomal protein S1 no data 29 78
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS04480 30S ribosomal protein S1 no data 29 78
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_20285 rpsA 30S ribosomal protein S1 no data 29 78
  Erwinia amylovora T8 OLJFJH_16125 30S ribosomal protein S1 no data 29 78
  Marinobacter adhaerens HP15 HP15_3552 exoribonuclease R strong 34 56
  Pectobacterium carotovorum WPP14 HER17_RS12275 30S ribosomal protein S1 no data 28 78
  Kangiella aquimarina DSM 16071 B158DRAFT_2327 ribosomal protein S1 no data 35 57
  Kangiella aquimarina DSM 16071 B158DRAFT_0683 Transcriptional accessory protein strong 27 74
  Phaeobacter inhibens DSM 17395 PGA1_c04830 30S ribosomal protein S1 no data 33 57
  Rhizobium sp. OAE497 ABIE40_RS00165 30S ribosomal protein S1 no data 33 74
  Caulobacter crescentus NA1000 CCNA_03702 SSU ribosomal protein S1P strong 31 62
  Caulobacter crescentus NA1000 Δfur CCNA_03702 SSU ribosomal protein S1P cofit 31 62
  Rahnella sp. WP5 EX31_RS18240 30S ribosomal protein S1 no data 28 78
  Dinoroseobacter shibae DFL-12 Dshi_1025 ribosomal protein S1 (RefSeq) no data 33 57
  Alteromonas macleodii MIT1002 MIT1002_02189 30S ribosomal protein S1 no data 29 78
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3897 ribosomal protein S1 no data 34 64
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS10900 30S ribosomal protein S1 no data 30 66
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2093 Ribosomal protein S1 no data 28 80
  Sphingobium sp. HT1-2 GFF1647 SSU ribosomal protein S1p no data 27 87
  Rhodopseudomonas palustris CGA009 TX73_000335 30S ribosomal protein S1 strong 34 64
  Marinobacter adhaerens HP15 HP15_1366 ribosomal S1 synthesis/modification protein no data 32 57
  Xanthobacter sp. DMC5 GFF2428 30S ribosomal protein S1 no data 29 78
  Rhodospirillum rubrum S1H Rru_A0293 Ribosomal protein S1 (NCBI) no data 26 82
  Sinorhizobium meliloti 1021 SMc00335 30S ribosomal protein S1 no data 32 74
  Burkholderia phytofirmans PsJN BPHYT_RS14885 30S ribosomal protein S1 no data 32 57
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_03920 SSU ribosomal protein S1P no data 32 57
  Paraburkholderia graminis OAS925 ABIE53_003152 small subunit ribosomal protein S1 no data 32 57
  Paraburkholderia sabiae LMG 24235 QEN71_RS04095 30S ribosomal protein S1 no data 32 57
  Alteromonas macleodii MIT1002 MIT1002_02189 30S ribosomal protein S1 no data 30 57
  Acinetobacter baumannii LAC-4 RR41_RS12135 30S ribosomal protein S1 no data 25 82
  Acidovorax sp. GW101-3H11 Ac3H11_2501 Transcription accessory protein (S1 RNA-binding domain) no data 32 57
  Methylophilus sp. DMC18 GFF734 30S ribosomal protein S1 no data 31 64
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS18035 30S ribosomal protein S1 no data 28 80
  Rhodanobacter sp. FW510-T8 OKGIIK_07265 rpsA 30S ribosomal protein S1 no data 28 80
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS11325 30S ribosomal protein S1 no data 28 80
  Bacteroides stercoris CC31F HMPREF1181_RS04035 RNA-binding transcriptional accessory protein insig. 25 58
  Agrobacterium fabrum C58 Atu4104 30S ribosomal protein S1 no data 32 64
  Shewanella amazonensis SB2B Sama_1736 rpsA 30S ribosomal protein S1 (RefSeq) no data 32 56
  Vibrio cholerae E7946 ATCC 55056 CSW01_09580 30S ribosomal protein S1 no data 30 59
  Lysobacter sp. OAE881 ABIE51_RS09345 30S ribosomal protein S1 no data 27 81
  Ralstonia solanacearum GMI1000 RS_RS04520 30S ribosomal protein S1 no data 33 57
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS13785 30S ribosomal protein S1 no data 32 60
  Ralstonia solanacearum UW163 UW163_RS16025 30S ribosomal protein S1 no data 32 60
  Bosea sp. OAE506 ABIE41_RS00310 30S ribosomal protein S1 no data 31 61
  Acinetobacter radioresistens SK82 MPMX26_01236 30S ribosomal protein S1 no data 25 82
  Desulfovibrio vulgaris Miyazaki F DvMF_1702 rpsA 30S ribosomal protein S1 (RefSeq) no data 29 75
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_04690 30S ribosomal protein S1 no data 25 80
  Ralstonia solanacearum PSI07 RPSI07_RS19685 30S ribosomal protein S1 no data 32 57
  Shewanella sp. ANA-3 Shewana3_1977 rpsA 30S ribosomal protein S1 (RefSeq) no data 32 56
  Shewanella oneidensis MR-1 SO2402 rpsA ribosomal protein S1 (NCBI ptt file) no data 32 56
  Pseudomonas putida KT2440 PP_1772 30S ribosomal protein S1 no data 28 57
  Herbaspirillum seropedicae SmR1 HSERO_RS18410 30S ribosomal protein S1 no data 31 59
  Pseudomonas sp. BP01 JOY50_RS16125 rpsA 30S ribosomal protein S1 no data 28 57
  Bifidobacterium breve UCC2003 BBR_RS14275 30S ribosomal protein S1 insig. 27 68
  Ralstonia sp. UNC404CL21Col ABZR87_RS09475 30S ribosomal protein S1 no data 32 57
  Rhodanobacter denitrificans MT42 LRK55_RS17890 30S ribosomal protein S1 no data 27 80
  Pseudomonas segetis P6 ACVTMO_RS14355 rpsA 30S ribosomal protein S1 no data 28 57
  Kangiella aquimarina DSM 16071 B158DRAFT_2327 ribosomal protein S1 no data 27 72
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2381.1 SSU ribosomal protein S1p no data 26 81