Homologs of GFF2665 from Sphingobium sp. HT1-2

tRNA pseudouridine(38-40) synthase (EC 5.4.99.12)
SEED: tRNA pseudouridine synthase A (EC 4.2.1.70)
KEGG: tRNA pseudouridine synthase A

128 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Sphingobium sp. HT1-2 GFF2665 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) cofit 100 100
o Sphingomonas koreensis DSMZ 15582 Ga0059261_0647 tRNA pseudouridine(38-40) synthase sig. 74 97
o Azospirillum brasilense Sp245 AZOBR_RS03570 tRNA pseudouridine synthase A no data 61 97
o Azospirillum sp. SherDot2 MPMX19_02005 tRNA pseudouridine synthase A no data 59 97
o Rhizobium sp. OAE497 ABIE40_RS01915 tRNA pseudouridine(38-40) synthase TruA sig. 54 99
o Rhodospirillum rubrum S1H Rru_A3352 Pseudouridylate synthase (NCBI) no data 53 97
o Sinorhizobium meliloti 1021 SMc01099 tRNA pseudouridine synthase A strong 55 97
o Magnetospirillum magneticum AMB-1 AMB_RS01225 tRNA pseudouridine(38-40) synthase TruA insig. 53 98
o Rhodopseudomonas palustris CGA009 TX73_003225 tRNA pseudouridine(38-40) synthase TruA strong 57 97
o Bosea sp. OAE506 ABIE41_RS00165 tRNA pseudouridine(38-40) synthase TruA strong 51 97
o Agrobacterium fabrum C58 Atu0368 tRNA pseudouridine synthase I strong 52 99
o Phaeobacter inhibens DSM 17395 PGA1_c05650 tRNA pseudouridine synthase A insig. 53 97
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS12340 tRNA pseudouridine(38-40) synthase TruA insig. 52 97
o Xanthobacter sp. DMC5 GFF2045 tRNA pseudouridine synthase A insig. 54 97
o Caulobacter crescentus NA1000 CCNA_00280 tRNA pseudouridine synthase A strong 51 98
o Caulobacter crescentus NA1000 Δfur CCNA_00280 tRNA pseudouridine synthase A cofit 51 98
o Dinoroseobacter shibae DFL-12 Dshi_1938 tRNA pseudouridine synthase A (RefSeq) sig. 52 95
o Ralstonia solanacearum GMI1000 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA insig. 42 98
o Ralstonia sp. UNC404CL21Col ABZR87_RS14510 tRNA pseudouridine(38-40) synthase TruA strong 41 98
o Paraburkholderia sabiae LMG 24235 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA cofit 43 97
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS02595 tRNA pseudouridine(38-40) synthase TruA no data 42 98
o Ralstonia solanacearum UW163 UW163_RS11130 tRNA pseudouridine(38-40) synthase TruA no data 42 98
o Ralstonia solanacearum PSI07 RPSI07_RS14720 tRNA pseudouridine(38-40) synthase TruA insig. 41 98
o Dickeya dadantii 3937 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA insig. 41 96
o Enterobacter asburiae PDN3 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase insig. 40 96
o Enterobacter sp. TBS_079 MPMX20_03253 tRNA pseudouridine synthase A strong 39 96
o Methylophilus sp. DMC18 GFF654 tRNA pseudouridine synthase A insig. 41 98
o Alteromonas macleodii MIT1002 MIT1002_02529 tRNA pseudouridine synthase A strong 39 97
o Dickeya dianthicola ME23 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA strong 41 96
o Dickeya dianthicola 67-19 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA insig. 41 96
o Cupriavidus basilensis FW507-4G11 RR42_RS14370 tRNA pseudouridine synthase A no data 40 97
o Klebsiella pneumoniae MKP103 KDGMDA_27215 tRNA pseudouridine(38-40) synthase TruA strong 39 97
o Klebsiella pneumoniae MRSN742743 KFA93_RS05930 truA;go_function=RNA tRNA pseudouridine(38-40) synthase TruA no data 39 97
o Shewanella amazonensis SB2B Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) strong 40 98
o Escherichia coli ECRC62 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA cofit 39 96
o Herbaspirillum seropedicae SmR1 HSERO_RS16485 tRNA pseudouridine synthase A strong 37 98
o Shewanella loihica PV-4 Shew_2306 tRNA pseudouridine synthase A (RefSeq) no data 39 96
o Escherichia coli ECOR38 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase strong 39 96
o Escherichia coli ECRC100 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase strong 39 96
o Escherichia coli ECRC101 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase strong 39 96
o Escherichia coli ECRC102 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase strong 39 96
o Escherichia coli ECRC98 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase no data 39 96
o Escherichia coli ECRC99 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase no data 39 96
o Escherichia coli Nissle 1917 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA sig. 39 96
o Escherichia coli BW25113 b2318 truA tRNA pseudouridine synthase A (NCBI) strong 39 96
o Pseudomonas putida KT2440 PP_1994 tRNA pseudouridine (38-40)synthase strong 41 98
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) strong 39 96
o Escherichia coli BL21 ECD_02243 tRNA pseudouridine(38-40) synthase no data 39 96
o Escherichia coli ECOR27 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA strong 39 96
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01387 tRNA pseudouridine synthase A insig. 39 96
o Klebsiella michiganensis M5al BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA insig. 39 96
o Pseudomonas sp. BP01 JOY50_RS16595 truA tRNA pseudouridine(38-40) synthase TruA sig. 41 97
o Shewanella sp. ANA-3 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) strong 39 96
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06069 tRNA pseudouridine38-40 synthase sig. 39 97
o Escherichia fergusonii Becca EFB2_01540 tRNA pseudouridine synthase A strong 38 96
o Dechlorosoma suillum PS Dsui_3194 pseudouridylate synthase I strong 40 97
o Kangiella aquimarina DSM 16071 B158DRAFT_1483 pseudouridylate synthase I strong 39 97
o Burkholderia phytofirmans PsJN BPHYT_RS33885 tRNA pseudouridine synthase A cofit 39 97
o Paraburkholderia graminis OAS925 ABIE53_004807 tRNA pseudouridine38-40 synthase strong 38 97
o Pseudomonas sp. SVBP6 COO64_RS05630 truA tRNA pseudouridine(38-40) synthase TruA insig. 40 96
o Pseudomonas sp. RS175 PFR28_02817 tRNA pseudouridine synthase A strong 39 96
o Erwinia amylovora T8 OLJFJH_11240 tRNA pseudouridine(38-40) synthase TruA strong 37 96
o Pseudomonas lactucae CFBP13502 GEMAOFIL_03941 tRNA pseudouridine synthase A cofit 40 96
o Lysobacter sp. OAE881 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA sig. 42 96
o Pseudomonas fluorescens FW300-N2C3 AO356_21435 pseudouridine synthase strong 39 96
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) strong 39 96
o Acinetobacter radioresistens SK82 MPMX26_00352 tRNA pseudouridine synthase A strong 37 97
o Vibrio cholerae E7946 ATCC 55056 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA insig. 38 96
o Pectobacterium carotovorum WPP14 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA strong 39 96
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_17875 truA tRNA pseudouridine(38-40) synthase TruA no data 38 96
o Erwinia tracheiphila SCR3 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA no data 38 96
o Castellaniella sp019104865 MT123 ABCV34_RS04265 tRNA pseudouridine(38-40) synthase TruA strong 41 97
o Pantoea sp. MT58 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA strong 38 97
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS00200 tRNA pseudouridine(38-40) synthase TruA strong 38 97
o Rahnella sp. WP5 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA strong 36 97
o Pseudomonas aeruginosa MRSN321 DY961_RS01355 truA;go_function=pseudouridine tRNA pseudouridine(38-40) synthase TruA strong 39 97
o Pseudomonas aeruginosa PUPa3 DQ20_RS34200 truA;go_function=pseudouridine tRNA pseudouridine(38-40) synthase TruA sig. 39 97
o Pseudomonas syringae pv. syringae B728a Psyr_1662 tRNA pseudouridine synthase sig. 39 97
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1662 tRNA pseudouridine synthase insig. 39 97
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) sig. 39 96
o Pseudomonas sp. DMC3 GFF792 tRNA pseudouridine synthase A cofit 38 96
o Serratia liquefaciens MT49 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA strong 37 96
o Pseudomonas fluorescens GW456-L13 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) strong 39 96
o Pseudomonas aeruginosa PA14 IKLFDK_15845 tRNA pseudouridine(38-40) synthase TruA strong 39 97
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS16085 tRNA pseudouridine(38-40) synthase TruA strong 35 97
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1961.1 tRNA pseudouridine synthase A (EC 4.2.1.70) strong 41 97
o Marinobacter adhaerens HP15 HP15_1829 tRNA pseudouridine synthase A strong 39 97
o Pseudomonas sp. S08-1 OH686_04450 tRNA pseudouridine(38-40) synthase strong 39 97
o Pseudomonas fluorescens FW300-N2E3 AO353_20660 pseudouridine synthase strong 39 96
o Pseudomonas orientalis W4I3 QF045_RS20705 tRNA pseudouridine(38-40) synthase TruA insig. 39 96
o Pseudomonas simiae WCS417 PS417_18565 pseudouridine synthase no data 39 96
o Acinetobacter baumannii LAC-4 RR41_RS16860 tRNA pseudouridine(38-40) synthase TruA sig. 35 97
o Pseudomonas fluorescens SBW25 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA sig. 39 96
o Pseudomonas fluorescens SBW25-INTG PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA strong 39 96
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3357 tRNA pseudouridine synthase A (EC 4.2.1.70) cofit 38 96
o Variovorax sp. SCN45 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) sig. 35 97
o Acidovorax sp. GW101-3H11 Ac3H11_1532 tRNA pseudouridine synthase A (EC 4.2.1.70) sig. 36 95
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA sig. 41 97
o Variovorax sp. OAS795 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA strong 36 97
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS16775 tRNA pseudouridine(38-40) synthase TruA strong 32 96
o Phocaeicola dorei CL03T12C01 ABI39_RS12690 tRNA pseudouridine(38-40) synthase TruA strong 32 96
o Bacteroides ovatus ATCC 8483 BACOVA_05075 tRNA pseudouridine synthase A strong 31 99
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS08335 tRNA pseudouridine(38-40) synthase TruA no data 39 96
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1728 pseudouridylate synthase I sig. 31 98
o Pseudomonas stutzeri RCH2 Psest_2585 pseudouridylate synthase I insig. 35 97
o Bacteroides thetaiotaomicron VPI-5482 BT4237 tRNA pseudouridine synthase A (NCBI ptt file) strong 30 100
o Pseudomonas segetis P6 ACVTMO_RS15195 truA tRNA pseudouridine(38-40) synthase TruA strong 35 96
o Rhodanobacter denitrificans MT42 LRK55_RS01480 tRNA pseudouridine(38-40) synthase TruA sig. 38 97
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS01700 tRNA pseudouridine(38-40) synthase TruA strong 38 97
o Synechococcus elongatus PCC 7942 Synpcc7942_2207 truA tRNA pseudouridine synthase A no data 35 97
o Bacteroides stercoris CC31F HMPREF1181_RS06250 tRNA pseudouridine(38-40) synthase TruA sig. 32 100
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_17725 tRNA pseudouridine synthase A strong 29 98
o Rhodanobacter sp. FW510-T8 OKGIIK_04830 truA tRNA pseudouridine(38-40) synthase TruA no data 39 97
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS15580 tRNA pseudouridine(38-40) synthase TruA strong 31 96
  Synechocystis sp000284455 PCC 6803 SGL_RS05725 tRNA pseudouridine(38-40) synthase TruA strong 32 97
  Cellulophaga baltica 18 M666_RS00300 tRNA pseudouridine(38-40) synthase TruA insig. 29 98
  Desulfovibrio vulgaris Hildenborough JW710 DVU0911 truA tRNA pseudouridine synthase A (TIGR) insig. 33 98
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS14365 tRNA pseudouridine(38-40) synthase TruA insig. 29 96
  Fusobacterium nucleatum SB010 HUW76_09850 tRNA pseudouridine(38-40) synthase TruA strong 30 97
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS21140 tRNA pseudouridine(38-40) synthase TruA strong 27 96
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_03495 tRNA pseudouridine(38-40) synthase TruA insig. 28 96
  Desulfovibrio vulgaris Miyazaki F DvMF_1395 truA tRNA pseudouridine synthase A (RefSeq) sig. 32 97
  Bifidobacterium breve UCC2003 BBR_RS18795 tRNA pseudouridine(38-40) synthase TruA strong 31 97
  Mycobacterium tuberculosis H37Rv Rv3455c Probable tRNA pseudouridine synthase a TruA (pseudouridylate synthase I) (pseudouridine synthase I) (uracil hydrolyase) no data 32 87
  Cellulophaga baltica 18 M666_RS17060 tRNA pseudouridine(38-40) synthase TruA insig. 23 95
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2981 pseudouridylate synthase I insig. 26 93
  Methanococcus maripaludis JJ MMJJ_RS03925 tRNA pseudouridine(38-40) synthase TruA insig. 23 94
  Methanococcus maripaludis S2 MMP_RS01450 tRNA pseudouridine(38-40) synthase TruA sig. 22 94