Homologs of Rru_A1111 from Rhodospirillum rubrum S1H

Pseudouridine synthase, RluD (NCBI)
SEED: Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)
KEGG: ribosomal large subunit pseudouridine synthase D

250 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Rhodospirillum rubrum S1H Rru_A1111 Pseudouridine synthase, RluD (NCBI) strong 100 100
o Magnetospirillum magneticum AMB-1 AMB_RS16095 RluA family pseudouridine synthase insig. 59 90
o Azospirillum sp. SherDot2 MPMX19_05442 Ribosomal large subunit pseudouridine synthase D strong 55 91
o Xanthobacter sp. DMC5 GFF2508 Ribosomal large subunit pseudouridine synthase D insig. 53 97
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS10060 RluA family pseudouridine synthase insig. 54 94
o Sphingomonas koreensis DSMZ 15582 Ga0059261_0664 pseudouridine synthase, RluA family strong 54 89
o Caulobacter crescentus NA1000 CCNA_00485 ribosomal large subunit pseudouridine synthase D strong 54 87
o Caulobacter crescentus NA1000 Δfur CCNA_00485 ribosomal large subunit pseudouridine synthase D cofit 54 87
o Sinorhizobium meliloti 1021 SMc00647 ribosomal large subunit pseudouridine synthase strong 52 88
o Sphingobium sp. HT1-2 GFF4062 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) cofit 51 91
o Rhizobium sp. OAE497 ABIE40_RS14790 RluA family pseudouridine synthase sig. 50 87
o Agrobacterium fabrum C58 Atu2443 ribosomal large subunit pseudouridine synthase, RluD subfamily no data 50 89
o Rhodopseudomonas palustris CGA009 TX73_001905 RluA family pseudouridine synthase strong 51 88
o Bosea sp. OAE506 ABIE41_RS05635 RluA family pseudouridine synthase sig. 50 87
o Synechococcus elongatus PCC 7942 Synpcc7942_1112 ribosomal large subunit pseudouridine synthase D strong 47 89
o Phaeobacter inhibens DSM 17395 PGA1_c09000 ribosomal large subunit pseudouridine synthase D strong 46 88
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0642 pseudouridine synthase, RluA family strong 43 96
o Fusobacterium nucleatum SB010 HUW76_08575 RluA family pseudouridine synthase strong 42 90
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_15205 RNA pseudouridine synthase strong 46 89
o Synechocystis sp000284455 PCC 6803 SGL_RS11530 RluA family pseudouridine synthase strong 43 92
o Kangiella aquimarina DSM 16071 B158DRAFT_2532 Pseudouridylate synthases, 23S RNA-specific strong 45 89
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00848 ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-) insig. 44 96
  Dechlorosoma suillum PS Dsui_2530 pseudouridine synthase, RluA family sig. 46 92
  Paraburkholderia graminis OAS925 ABIE53_002062 23S rRNA pseudouridine1911/1915/1917 synthase strong 45 88
o Dinoroseobacter shibae DFL-12 Dshi_2610 pseudouridine synthase, RluA family (RefSeq) strong 49 83
  Burkholderia phytofirmans PsJN BPHYT_RS09135 ribosomal large subunit pseudouridine synthase D sig. 46 88
o Cellulophaga baltica 18 M666_RS09010 RluA family pseudouridine synthase sig. 44 86
  Paraburkholderia sabiae LMG 24235 QEN71_RS22215 RluA family pseudouridine synthase no data 45 89
o Marinobacter adhaerens HP15 HP15_527 pseudouridine synthase, RluA family strong 43 94
o Alteromonas macleodii MIT1002 MIT1002_02679 Ribosomal large subunit pseudouridine synthase D cofit 43 90
o Vibrio cholerae E7946 ATCC 55056 CSW01_03695 ribosomal large subunit pseudouridine synthase D strong 44 90
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS14415 pseudouridine synthase strong 43 88
  Methylophilus sp. DMC18 GFF1213 Ribosomal large subunit pseudouridine synthase D insig. 46 88
o Shewanella loihica PV-4 Shew_2950 RluA family pseudouridine synthase (RefSeq) strong 44 89
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS03985 RluA family pseudouridine synthase sig. 42 89
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS08615 RluA family pseudouridine synthase strong 41 97
o Phocaeicola dorei CL03T12C01 ABI39_RS02845 RluA family pseudouridine synthase strong 41 97
o Serratia liquefaciens MT49 IAI46_03985 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 44 90
o Escherichia coli ECOR38 HEPCGN_20375 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 43 90
o Klebsiella michiganensis M5al BWI76_RS21450 23S rRNA pseudouridine(1911/1915/1917) synthase sig. 43 88
o Pectobacterium carotovorum WPP14 HER17_RS05400 23S rRNA pseudouridine(1911/1915/1917) synthase RluD sig. 44 86
o Cupriavidus basilensis FW507-4G11 RR42_RS07590 pseudouridine synthase strong 43 96
o Escherichia fergusonii Becca EFB2_01296 Ribosomal large subunit pseudouridine synthase D sig. 42 90
o Escherichia coli ECOR27 NOLOHH_12925 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 42 90
o Escherichia coli ECRC62 BNILDI_11730 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 42 90
o Escherichia coli Nissle 1917 ECOLIN_RS14675 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 42 90
o Klebsiella pneumoniae MKP103 KDGMDA_02140 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 44 88
o Klebsiella pneumoniae MRSN742743 KFA93_RS24575 rluD;go_function=RNA 23S rRNA pseudouridine(1911/1915/1917) synthase RluD cofit 44 88
o Shewanella amazonensis SB2B Sama_2605 pseudouridylate synthase (RefSeq) no data 43 88
o Escherichia coli ECRC100 OKFHMN_21250 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD cofit 42 90
o Escherichia coli ECRC101 MCAODC_11780 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 42 90
o Escherichia coli ECRC102 NIAGMN_19020 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 42 90
o Escherichia coli ECRC98 JDDGAC_24915 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 42 90
o Escherichia coli ECRC99 KEDOAH_06970 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD no data 42 90
o Escherichia coli BL21 ECD_02484 23S rRNA pseudouridine(1911,1915,1917) synthase strong 42 90
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01112 Ribosomal large subunit pseudouridine synthase D sig. 42 90
o Escherichia coli BW25113 b2594 rluD 23S rRNA pseudouridine synthase (NCBI) no data 42 90
o Ralstonia solanacearum PSI07 RPSI07_RS15970 RluA family pseudouridine synthase insig. 44 94
o Enterobacter sp. TBS_079 MPMX20_03463 Ribosomal large subunit pseudouridine synthase D strong 43 88
o Enterobacter asburiae PDN3 EX28DRAFT_2695 pseudouridine synthase, RluA family cofit 43 88
o Acinetobacter baumannii LAC-4 RR41_RS15070 23S rRNA pseudouridine(1911/1915/1917) synthase RluD insig. 40 97
o Shewanella sp. ANA-3 Shewana3_3171 ribosomal large subunit pseudouridine synthase D (RefSeq) strong 43 88
o Ralstonia solanacearum GMI1000 RS_RS08205 RluA family pseudouridine synthase sig. 43 94
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS12640 RluA family pseudouridine synthase strong 41 95
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS01520 RluA family pseudouridine synthase insig. 43 94
o Ralstonia solanacearum UW163 UW163_RS14830 RluA family pseudouridine synthase insig. 43 94
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_26870 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 43 88
o Erwinia tracheiphila SCR3 LU632_RS16945 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD sig. 43 88
o Dickeya dadantii 3937 DDA3937_RS16110 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 43 86
o Acidovorax sp. GW101-3H11 Ac3H11_1787 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) sig. 44 85
o Dickeya dianthicola 67-19 HGI48_RS16235 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 43 86
o Dickeya dianthicola ME23 DZA65_RS17330 23S rRNA pseudouridine(1911/1915/1917) synthase RluD cofit 43 86
o Rhodanobacter denitrificans MT42 LRK55_RS04745 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 43 90
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS04965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 43 90
o Bacteroides ovatus ATCC 8483 BACOVA_03528 pseudouridine synthase, RluA family strong 42 94
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4182 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) strong 42 88
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS05045 23S rRNA pseudouridine(1911/1915/1917) synthase RluD insig. 44 89
o Bacteroides thetaiotaomicron VPI-5482 BT3712 ribosomal large subunit pseudouridine synthase D (NCBI ptt file) strong 42 94
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS10965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 42 93
o Erwinia amylovora T8 OLJFJH_09725 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 43 86
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1362.1 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) sig. 43 88
o Pantoea sp. MT58 IAI47_04425 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 42 88
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS04800 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD cofit 42 88
o Variovorax sp. SCN45 GFF988 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) cofit 44 88
o Rahnella sp. WP5 EX31_RS07570 23S rRNA pseudouridine(1911/1915/1917) synthase RluD cofit 43 86
  Herbaspirillum seropedicae SmR1 HSERO_RS15070 ribosomal large subunit pseudouridine synthase D insig. 44 89
o Pseudomonas putida KT2440 PP_0623 23S rRNA pseudouridine(1911,1915,1917) synthase no data 43 91
o Rhodanobacter sp. FW510-T8 OKGIIK_01790 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 44 90
o Pseudomonas fluorescens FW300-N2C3 AO356_15925 ribosomal large subunit pseudouridine synthase D strong 43 91
o Lysobacter sp. OAE881 ABIE51_RS04885 23S rRNA pseudouridine(1911/1915/1917) synthase RluD cofit 43 93
o Pseudomonas sp. BP01 JOY50_RS27130 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD sig. 43 91
o Pseudomonas aeruginosa MRSN321 DY961_RS23730 rluD;go_function=RNA 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 44 90
o Pseudomonas aeruginosa PA14 IKLFDK_00810 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 44 90
o Pseudomonas aeruginosa PUPa3 DQ20_RS56195 rluD;go_function=RNA 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 44 90
o Bacteroides stercoris CC31F HMPREF1181_RS03250 RluA family pseudouridine synthase strong 41 89
o Ralstonia sp. UNC404CL21Col ABZR87_RS13315 RluA family pseudouridine synthase strong 44 86
o Pseudomonas fluorescens FW300-N2E3 AO353_14220 ribosomal large subunit pseudouridine synthase D strong 43 91
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1493 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) no data 43 89
o Variovorax sp. OAS795 ABID97_RS14190 RluA family pseudouridine synthase strong 42 94
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2822 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) no data 43 89
o Pseudomonas sp. DMC3 GFF4004 Ribosomal large subunit pseudouridine synthase D cofit 43 91
o Pseudomonas fluorescens SBW25 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD insig. 42 91
o Pseudomonas fluorescens SBW25-INTG PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 42 91
o Pseudomonas lactucae CFBP13502 GEMAOFIL_00969 Ribosomal large subunit pseudouridine synthase D cofit 42 91
o Pseudomonas orientalis W4I3 QF045_RS06805 23S rRNA pseudouridine(1911/1915/1917) synthase RluD sig. 42 91
o Pseudomonas protegens RBAN4 FABNJH_26810 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD insig. 42 91
o Pseudomonas simiae WCS417 PS417_03820 ribosomal large subunit pseudouridine synthase D no data 42 91
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5127 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) no data 42 89
o Pseudomonas sp. RS175 PFR28_03748 Ribosomal large subunit pseudouridine synthase D strong 43 89
o Pseudomonas syringae pv. syringae B728a Psyr_0726 ribosomal large subunit pseudouridine synthase D strong 42 91
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0726 ribosomal large subunit pseudouridine synthase D strong 42 91
  Desulfovibrio vulgaris Hildenborough JW710 DVU1024 rluD/coaE ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase (TIGR) insig. 41 92
  Desulfovibrio vulgaris Miyazaki F DvMF_0912 pseudouridine synthase, RluA family (RefSeq) no data 42 91
o Pseudomonas sp. S08-1 OH686_16410 LSU rRNA pseudouridine(1911/1915/1917) synthase cofit 41 90
o Pseudomonas sp. SVBP6 COO64_RS11055 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD insig. 42 92
o Pseudomonas segetis P6 ACVTMO_RS19440 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 42 88
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4870 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) sig. 43 92
o Pseudomonas stutzeri RCH2 Psest_0709 pseudouridine synthase, RluA family strong 42 91
o Acinetobacter radioresistens SK82 MPMX26_00735 Ribosomal large subunit pseudouridine synthase D strong 40 97
o Castellaniella sp019104865 MT123 ABCV34_RS01885 RluA family pseudouridine synthase strong 42 86
  Methanococcus maripaludis S2 MMP_RS05225 RluA family pseudouridine synthase insig. 34 88
  Methanococcus maripaludis JJ MMJJ_RS09155 RluA family pseudouridine synthase insig. 35 90
  Mycobacterium tuberculosis H37Rv Rv1540 Conserved hypothetical protein member of yabO/yceC/yfiI family no data 38 88
  Rhodanobacter sp. FW510-T8 OKGIIK_07405 rluA 23S rRNA pseudouridine(955/2504/2580) synthase sig. 35 90
  Rhodanobacter denitrificans MT42 LRK55_RS17750 RluA family pseudouridine synthase strong 33 90
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS17895 RluA family pseudouridine synthase strong 33 90
  Azospirillum sp. SherDot2 MPMX19_01718 Ribosomal large subunit pseudouridine synthase C insig. 33 93
  Sinorhizobium meliloti 1021 SMc01275 ribosomal large subunit pseudouridine synthase C protein strong 32 88
  Rhodospirillum rubrum S1H Rru_A2659 Pseudouridine synthase, RluD (NCBI) no data 36 87
  Magnetospirillum magneticum AMB-1 AMB_RS15620 RluA family pseudouridine synthase cofit 36 88
  Phaeobacter inhibens DSM 17395 PGA1_c01950 ribosomal large subunit pseudouridine synthase C no data 33 87
  Escherichia coli Nissle 1917 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC strong 33 88
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS11465 RluA family pseudouridine synthase no data 34 84
  Escherichia coli ECRC100 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC strong 33 90
  Escherichia coli ECRC101 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC strong 33 90
  Escherichia coli ECRC102 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC insig. 33 90
  Escherichia coli ECRC98 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC insig. 33 90
  Escherichia coli ECRC99 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC no data 33 90
  Escherichia coli BL21 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase strong 33 88
  Escherichia fergusonii Becca EFB2_02889 Ribosomal large subunit pseudouridine synthase C insig. 33 88
  Escherichia coli ECOR27 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC strong 33 88
  Escherichia coli ECOR38 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC strong 33 88
  Escherichia coli ECRC62 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC insig. 33 88
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C strong 33 88
  Escherichia coli BW25113 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) strong 33 88
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS02725 RluA family pseudouridine synthase sig. 34 85
  Rahnella sp. WP5 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC sig. 32 90
  Bacteroides stercoris CC31F HMPREF1181_RS16530 RluA family pseudouridine synthase insig. 33 84
  Enterobacter asburiae PDN3 EX28DRAFT_1844 pseudouridine synthase, RluA family insig. 32 90
  Klebsiella pneumoniae MKP103 KDGMDA_18660 23S rRNA pseudouridine(955/2504/2580) synthase RluC sig. 33 90
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) cofit 32 90
  Klebsiella pneumoniae MRSN742743 KFA93_RS00230 rluC;go_function=RNA 23S rRNA pseudouridine(955/2504/2580) synthase RluC strong 32 90
  Enterobacter sp. TBS_079 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C sig. 32 88
  Azospirillum brasilense Sp245 AZOBR_RS06905 pseudouridine synthase strong 32 87
  Pectobacterium carotovorum WPP14 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC cofit 32 90
  Erwinia amylovora T8 OLJFJH_15565 23S rRNA pseudouridine(955/2504/2580) synthase RluC sig. 33 90
  Bosea sp. OAE506 ABIE41_RS14710 RluA family pseudouridine synthase insig. 32 88
  Klebsiella michiganensis M5al BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase strong 32 90
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS12165 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC cofit 33 90
  Sphingomonas koreensis DSMZ 15582 Ga0059261_1033 pseudouridine synthase, RluA family no data 33 90
  Agrobacterium fabrum C58 Atu1471 ribosomal large subunit pseudouridine synthase C no data 32 84
  Pantoea sp. MT58 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC sig. 32 90
  Xanthobacter sp. DMC5 GFF1347 Ribosomal large subunit pseudouridine synthase C insig. 31 91
  Erwinia tracheiphila SCR3 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC cofit 31 93
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_00715 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC cofit 31 93
  Variovorax sp. SCN45 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) insig. 31 91
  Kangiella aquimarina DSM 16071 B158DRAFT_1770 ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) insig. 30 92
  Rhizobium sp. OAE497 ABIE40_RS09915 RluA family pseudouridine synthase sig. 32 87
  Alteromonas macleodii MIT1002 MIT1002_01725 Ribosomal large subunit pseudouridine synthase C insig. 33 87
  Ralstonia sp. UNC404CL21Col ABZR87_RS10090 RluA family pseudouridine synthase sig. 33 88
  Serratia liquefaciens MT49 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC insig. 32 90
  Bifidobacterium breve UCC2003 BBR_RS17135 RluA family pseudouridine synthase strong 36 88
  Rhodopseudomonas palustris CGA009 TX73_016595 RluA family pseudouridine synthase insig. 32 84
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS14375 RluA family pseudouridine synthase strong 32 89
  Ralstonia solanacearum UW163 UW163_RS11840 RluA family pseudouridine synthase insig. 32 89
  Sphingobium sp. HT1-2 GFF3074 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) cofit 32 88
  Cupriavidus basilensis FW507-4G11 RR42_RS14155 pseudouridine synthase strong 31 95
  Herbaspirillum seropedicae SmR1 HSERO_RS09415 ribosomal large subunit pseudouridine synthase C strong 29 92
  Bacteroides ovatus ATCC 8483 BACOVA_02266 pseudouridine synthase, RluA family sig. 29 86
  Variovorax sp. OAS795 ABID97_RS08250 RluA family pseudouridine synthase strong 32 89
  Pseudomonas fluorescens FW300-N2C3 AO356_20125 23S rRNA pseudouridylate synthase strong 33 87
  Bacteroides thetaiotaomicron VPI-5482 BT0642 RNA pseudouridylate synthase (NCBI ptt file) sig. 30 84
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) strong 33 87
  Caulobacter crescentus NA1000 CCNA_01343 ribosomal large subunit pseudouridine synthase C sig. 36 75
  Caulobacter crescentus NA1000 Δfur CCNA_01343 ribosomal large subunit pseudouridine synthase C cofit 36 75
  Pseudomonas segetis P6 ACVTMO_RS10270 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC cofit 35 82
  Pseudomonas simiae WCS417 PS417_19475 pseudouridine synthase sig. 34 65
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF121 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) cofit 32 88
  Acidovorax sp. GW101-3H11 Ac3H11_1590 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) strong 31 88
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS13190 RluA family pseudouridine synthase insig. 29 85
  Pseudomonas syringae pv. syringae B728a Psyr_1610 ribosomal large subunit pseudouridine synthase A insig. 35 66
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1610 ribosomal large subunit pseudouridine synthase A insig. 35 66
  Ralstonia solanacearum GMI1000 RS_RS05155 RluA family pseudouridine synthase strong 32 90
  Shewanella sp. ANA-3 Shewana3_1430 pseudouridine synthase (RefSeq) sig. 37 67
  Bacteroides ovatus ATCC 8483 BACOVA_05306 pseudouridine synthase, RluA family insig. 35 72
  Pseudomonas sp. DMC3 GFF2599 Dual-specificity RNA pseudouridine synthase RluA insig. 35 66
  Pseudomonas lactucae CFBP13502 GEMAOFIL_04097 Dual-specificity RNA pseudouridine synthase RluA cofit 34 65
  Acinetobacter baumannii LAC-4 RR41_RS16980 RluA family pseudouridine synthase sig. 34 73
  Dinoroseobacter shibae DFL-12 Dshi_0315 pseudouridine synthase, RluA family (RefSeq) insig. 31 87
  Pseudomonas sp. S08-1 OH686_19760 LSU rRNA pseudouridine(746) synthase or tRNA pseudouridine(32) synthase insig. 35 66
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS07865 RluA family pseudouridine synthase cofit 34 82
  Paraburkholderia sabiae LMG 24235 QEN71_RS04500 RluA family pseudouridine synthase cofit 32 87
  Ralstonia solanacearum PSI07 RPSI07_RS19085 RluA family pseudouridine synthase strong 32 89
  Shewanella sp. ANA-3 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) sig. 30 88
  Pseudomonas fluorescens FW300-N2C3 AO356_19405 pseudouridine synthase insig. 34 66
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3753 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) sig. 34 66
  Shewanella loihica PV-4 Shew_1594 RluA family pseudouridine synthase (RefSeq) sig. 28 88
  Pseudomonas fluorescens FW300-N2E3 AO353_02385 pseudouridine synthase no data 34 66
  Pseudomonas stutzeri RCH2 Psest_2948 pseudouridine synthase, RluA family sig. 36 66
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5794 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) strong 34 66
  Dickeya dianthicola 67-19 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC insig. 33 90
  Dickeya dianthicola ME23 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC insig. 33 90
  Burkholderia phytofirmans PsJN BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C sig. 30 92
  Magnetospirillum magneticum AMB-1 AMB_RS17255 RNA pseudouridine synthase insig. 37 60
  Pseudomonas aeruginosa PA14 IKLFDK_16600 RNA pseudouridine synthase insig. 36 66
  Pseudomonas sp. RS175 PFR28_03154 Dual-specificity RNA pseudouridine synthase RluA insig. 34 66
  Acinetobacter radioresistens SK82 MPMX26_00317 Ribosomal large subunit pseudouridine synthase C insig. 33 73
  Vibrio cholerae E7946 ATCC 55056 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC insig. 29 85
  Shewanella amazonensis SB2B Sama_2197 pseudouridylate synthase (RefSeq) insig. 36 67
  Pseudomonas aeruginosa PUPa3 DQ20_RS40350 RluA family pseudouridine synthase insig. 35 66
  Pseudomonas protegens RBAN4 FABNJH_22650 rluA Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific insig. 34 65
  Pseudomonas fluorescens SBW25 PFLU_RS21445 RluA family pseudouridine synthase insig. 34 65
  Pseudomonas fluorescens SBW25-INTG PFLU_RS21445 RluA family pseudouridine synthase sig. 34 65
  Pseudomonas orientalis W4I3 QF045_RS21620 RluA family pseudouridine synthase insig. 34 65
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4194 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) insig. 34 65
  Pseudomonas sp. S08-1 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase cofit 32 85
  Dickeya dadantii 3937 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC cofit 32 90
  Fusobacterium nucleatum SB010 HUW76_06230 RluA family pseudouridine synthase cofit 31 68
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS03715 RluA family pseudouridine synthase sig. 29 83
  Pseudomonas aeruginosa MRSN321 DY961_RS00685 RluA family pseudouridine synthase insig. 35 66
  Pseudomonas sp. DMC3 GFF4765 Ribosomal large subunit pseudouridine synthase C cofit 32 89
  Pseudomonas stutzeri RCH2 Psest_1680 pseudouridine synthase, RluA family no data 31 85
  Pseudomonas syringae pv. syringae B728a Psyr_1639 ribosomal large subunit pseudouridine synthase C sig. 34 82
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1639 ribosomal large subunit pseudouridine synthase C insig. 34 82
  Pseudomonas sp. SVBP6 COO64_RS06925 RluA family pseudouridine synthase insig. 35 65
  Pseudomonas sp. RS175 PFR28_03018 Ribosomal large subunit pseudouridine synthase C sig. 32 87
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04340 23S rRNA pseudouridine955/2504/2580 synthase insig. 31 87
  Pseudomonas putida KT2440 PP_1906 ribosomal large subunit pseudouridine synthase C strong 33 84
  Phocaeicola dorei CL03T12C01 ABI39_RS17485 RluA family pseudouridine synthase insig. 29 83
  Pseudomonas sp. SVBP6 COO64_RS05845 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC insig. 33 84
  Paraburkholderia graminis OAS925 ABIE53_003058 23S rRNA pseudouridine955/2504/2580 synthase sig. 30 87
  Dechlorosoma suillum PS Dsui_2437 pseudouridine synthase, RluA family strong 30 85
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS05180 RluA family pseudouridine synthase insig. 35 69
  Pseudomonas sp. BP01 JOY50_RS16355 RluA family pseudouridine synthase insig. 35 66
  Pseudomonas segetis P6 ACVTMO_RS15920 RluA family pseudouridine synthase insig. 33 66
  Methylophilus sp. DMC18 GFF1177 Ribosomal large subunit pseudouridine synthase C insig. 29 89
  Shewanella amazonensis SB2B Sama_1988 pseudouridylate synthase (RefSeq) strong 29 89
  Lysobacter sp. OAE881 ABIE51_RS11800 RluA family pseudouridine synthase cofit 34 81
  Agrobacterium fabrum C58 Atu4041 ribosomal large subunit pseudouridine synthase A sig. 33 62
  Pseudomonas simiae WCS417 PS417_21480 23S rRNA pseudouridylate synthase strong 31 87