Homologs of PP_4996 from Pseudomonas putida KT2440

Putative Holliday junction resolvase
SEED: Putative Holliday junction resolvase YggF
KEGG: putative holliday junction resolvase

123 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas putida KT2440 PP_4996 Putative Holliday junction resolvase no data 100 100
o Pseudomonas sp. BP01 JOY50_RS09710 ruvX Holliday junction resolvase RuvX no data 99 100
o Pseudomonas sp. SVBP6 COO64_RS13585 ruvX Holliday junction resolvase RuvX no data 95 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1018 Putative Holliday junction resolvase YggF no data 88 98
o Pseudomonas sp. RS175 PFR28_04235 Putative pre-16S rRNA nuclease no data 89 97
o Pseudomonas fluorescens FW300-N2C3 AO356_13460 Holliday junction resolvase no data 89 97
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4608 Putative Holliday junction resolvase YggF no data 89 97
o Pseudomonas sp. DMC3 GFF202 Putative pre-16S rRNA nuclease no data 88 98
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2349 Putative Holliday junction resolvase YggF no data 87 98
o Pseudomonas orientalis W4I3 QF045_RS01090 Holliday junction resolvase RuvX no data 88 98
o Pseudomonas simiae WCS417 PS417_26690 Holliday junction resolvase no data 88 98
o Pseudomonas fluorescens FW300-N2E3 AO353_08125 Holliday junction resolvase no data 87 98
o Pseudomonas protegens RBAN4 FABNJH_29390 ruvX Holliday junction resolvase RuvX no data 87 97
o Pseudomonas fluorescens SBW25 PFLU_RS28335 Holliday junction resolvase RuvX no data 86 98
o Pseudomonas fluorescens SBW25-INTG PFLU_RS28335 Holliday junction resolvase RuvX no data 86 98
o Pseudomonas lactucae CFBP13502 GEMAOFIL_05475 Putative pre-16S rRNA nuclease no data 86 98
o Pseudomonas syringae pv. syringae B728a Psyr_0484 Conserved hypothetical protein 250 no data 87 98
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0484 Conserved hypothetical protein 250 no data 87 98
o Pseudomonas sp. S08-1 OH686_10930 Putative pre-16S rRNA nuclease YqgF no data 85 96
o Pseudomonas stutzeri RCH2 Psest_0293 RNAse H-fold protein YqgF no data 83 97
o Pseudomonas segetis P6 ACVTMO_RS03075 ruvX Holliday junction resolvase RuvX no data 79 97
o Pseudomonas aeruginosa MRSN321 DY961_RS22000 ruvX;go_component=cytoplasm|0005737||IEA;go_function=molecular_function|0003674||IEA;go_process=biological_process|0008150||IEA;inference=COORDINATES Holliday junction resolvase RuvX no data 81 95
o Pseudomonas aeruginosa PA14 IKLFDK_23400 Holliday junction resolvase RuvX no data 81 95
o Pseudomonas aeruginosa PUPa3 DQ20_RS37300 ruvX;go_component=cytoplasm|0005737||IEA;go_function=molecular_function|0003674||IEA;go_process=biological_process|0008150||IEA;inference=COORDINATES Holliday junction resolvase RuvX no data 81 95
o Pectobacterium carotovorum WPP14 HER17_RS02625 Holliday junction resolvase RuvX no data 54 96
o Dickeya dianthicola 67-19 HGI48_RS18505 Holliday junction resolvase RuvX no data 57 95
o Dickeya dianthicola ME23 DZA65_RS19640 Holliday junction resolvase RuvX no data 57 95
o Dickeya dadantii 3937 DDA3937_RS18570 Holliday junction resolvase RuvX no data 55 95
o Pantoea sp. MT58 IAI47_03605 Holliday junction resolvase RuvX no data 57 94
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS03840 ruvX Holliday junction resolvase RuvX no data 57 94
o Erwinia amylovora T8 OLJFJH_08560 Holliday junction resolvase RuvX no data 54 93
o Rahnella sp. WP5 EX31_RS02675 Holliday junction resolvase RuvX no data 53 95
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_03440 ruvX Holliday junction resolvase RuvX no data 52 94
o Erwinia tracheiphila SCR3 LU632_RS05470 ruvX Holliday junction resolvase RuvX no data 52 94
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3051 Putative Holliday junction resolvase YggF no data 53 94
o Shewanella amazonensis SB2B Sama_2473 Holliday junction resolvase-like protein (RefSeq) no data 51 96
o Shewanella loihica PV-4 Shew_1143 Holliday junction resolvase-like protein (RefSeq) no data 53 94
o Alteromonas macleodii MIT1002 MIT1002_03057 Putative Holliday junction resolvase no data 53 96
o Escherichia coli BL21 ECD_02779 putative Holliday junction resolvase no data 53 94
o Escherichia fergusonii Becca EFB2_00953 Putative pre-16S rRNA nuclease no data 53 94
o Escherichia coli ECOR27 NOLOHH_11135 ruvX Holliday junction resolvase RuvX no data 53 94
o Escherichia coli ECOR38 HEPCGN_18570 ruvX Holliday junction resolvase RuvX no data 53 94
o Escherichia coli ECRC62 BNILDI_09715 ruvX Holliday junction resolvase RuvX no data 53 94
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00769 Putative pre-16S rRNA nuclease no data 53 94
o Escherichia coli Nissle 1917 ECOLIN_RS16405 Holliday junction resolvase RuvX no data 53 94
o Escherichia coli BW25113 b2949 yqgF Holliday junction resolvase-like protein (NCBI) no data 53 94
o Escherichia coli ECRC100 OKFHMN_19265 ruvX Holliday junction resolvase RuvX no data 52 94
o Escherichia coli ECRC101 MCAODC_09785 ruvX Holliday junction resolvase RuvX no data 52 94
o Escherichia coli ECRC102 NIAGMN_17030 ruvX Holliday junction resolvase RuvX no data 52 94
o Escherichia coli ECRC98 JDDGAC_22895 ruvX Holliday junction resolvase RuvX no data 52 94
o Escherichia coli ECRC99 KEDOAH_08875 ruvX Holliday junction resolvase RuvX no data 52 94
o Shewanella oneidensis MR-1 SO3347 conserved hypothetical protein TIGR00250 (NCBI ptt file) no data 51 95
o Serratia liquefaciens MT49 IAI46_21400 Holliday junction resolvase RuvX no data 50 95
o Enterobacter sp. TBS_079 MPMX20_03807 Putative pre-16S rRNA nuclease no data 52 94
o Klebsiella michiganensis M5al BWI76_RS24085 Holliday junction resolvase RuvX no data 52 94
o Marinobacter adhaerens HP15 HP15_3509 Holliday junction resolvase no data 52 93
o Shewanella sp. ANA-3 Shewana3_1199 Holliday junction resolvase-like protein (RefSeq) no data 51 95
o Enterobacter asburiae PDN3 EX28DRAFT_2987 RNAse H-fold protein YqgF no data 51 94
o Klebsiella pneumoniae MKP103 KDGMDA_04600 YqgE/AlgH family protein no data 51 94
o Klebsiella pneumoniae MRSN742743 KFA93_RS12145 ruvX;go_process=rRNA Holliday junction resolvase RuvX no data 51 94
o Vibrio cholerae E7946 ATCC 55056 CSW01_02480 Holliday junction resolvase RuvX no data 47 96
o Kangiella aquimarina DSM 16071 B158DRAFT_0192 RNAse H-fold protein YqgF no data 47 98
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04815 putative holliday junction resolvase no data 51 94
o Paraburkholderia graminis OAS925 ABIE53_001129 putative Holliday junction resolvase no data 49 94
o Burkholderia phytofirmans PsJN BPHYT_RS04225 Holliday junction resolvase no data 50 94
o Acinetobacter radioresistens SK82 MPMX26_00237 Putative pre-16S rRNA nuclease no data 44 93
  Methylophilus sp. DMC18 GFF870 Putative pre-16S rRNA nuclease no data 45 94
o Paraburkholderia sabiae LMG 24235 QEN71_RS25790 Holliday junction resolvase RuvX no data 49 94
o Acinetobacter baumannii LAC-4 RR41_RS17390 Holliday junction resolvase RuvX no data 43 92
o Dechlorosoma suillum PS Dsui_0594 RNAse H-fold protein YqgF no data 43 95
o Variovorax sp. SCN45 GFF2158 Putative pre-16S rRNA nuclease YqgF no data 43 98
  Castellaniella sp019104865 MT123 ABCV34_RS10725 Holliday junction resolvase RuvX no data 48 72
o Rhodanobacter denitrificans MT42 LRK55_RS03985 Holliday junction resolvase RuvX no data 40 95
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS04215 Holliday junction resolvase RuvX no data 40 95
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1721.1 Putative Holliday junction resolvase YggF no data 40 94
  Lysobacter sp. OAE881 ABIE51_RS16020 Holliday junction resolvase RuvX no data 44 70
o Variovorax sp. OAS795 ABID97_RS24670 Holliday junction resolvase RuvX no data 44 94
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS10385 Holliday junction resolvase RuvX no data 45 70
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF649 Putative Holliday junction resolvase YggF no data 40 98
o Ralstonia sp. UNC404CL21Col ABZR87_RS08615 Holliday junction resolvase RuvX no data 38 95
o Ralstonia solanacearum PSI07 RPSI07_RS20645 Holliday junction resolvase RuvX no data 36 94
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS12615 Holliday junction resolvase RuvX no data 38 94
o Herbaspirillum seropedicae SmR1 HSERO_RS02320 Holliday junction resolvase no data 38 96
o Ralstonia solanacearum UW163 UW163_RS00950 Holliday junction resolvase RuvX no data 37 94
  Acidovorax sp. GW101-3H11 Ac3H11_3980 Putative Holliday junction resolvase YqgF no data 45 74
o Ralstonia solanacearum GMI1000 RS_RS03400 Holliday junction resolvase RuvX no data 36 94
o Cupriavidus basilensis FW507-4G11 RR42_RS15870 Holliday junction DNA helicase no data 39 94
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS05710 Holliday junction resolvase RuvX no data 44 72
o Synechococcus elongatus PCC 7942 Synpcc7942_2398 Holliday junction resolvase-like protein strong 36 93
o Synechocystis sp000284455 PCC 6803 SGL_RS17860 Holliday junction resolvase RuvX strong 36 93
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS20370 Holliday junction resolvase RuvX no data 35 95
  Rhodanobacter sp. FW510-T8 OKGIIK_11090 ruvX Holliday junction resolvase RuvX no data 45 72
  Bosea sp. OAE506 ABIE41_RS17195 Holliday junction resolvase RuvX no data 39 94
  Dinoroseobacter shibae DFL-12 Dshi_1064 Holliday junction resolvase YqgF (RefSeq) no data 34 95
  Phaeobacter inhibens DSM 17395 PGA1_c19190 RNAse H-fold protein YqgF no data 32 94
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS22055 Holliday junction resolvase RuvX no data 31 94
  Azospirillum sp. SherDot2 MPMX19_01571 Putative pre-16S rRNA nuclease no data 35 94
  Azospirillum brasilense Sp245 AZOBR_RS20625 Holliday junction resolvase insig. 33 94
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0078 RNAse H-fold protein YqgF no data 36 94
  Bacteroides stercoris CC31F HMPREF1181_RS04285 Holliday junction resolvase RuvX no data 33 94
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_18175 Holliday junction resolvase RuvX no data 31 96
  Caulobacter crescentus NA1000 CCNA_02521 endonuclease involved in recombination no data 35 94
  Caulobacter crescentus NA1000 Δfur CCNA_02521 endonuclease involved in recombination cofit 35 94
  Bacteroides ovatus ATCC 8483 BACOVA_01773 Holliday junction resolvase-like protein no data 32 94
  Rhodospirillum rubrum S1H Rru_A3178 Holliday junction resolvase YqgF (NCBI) no data 33 96
  Sphingobium sp. HT1-2 GFF2047 Putative pre-16S rRNA nuclease YqgF no data 33 94
  Bacteroides thetaiotaomicron VPI-5482 BT0419 putative endonuclease (NCBI ptt file) no data 32 94
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1885 RNAse H-fold protein YqgF no data 30 94
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS04270 Holliday junction resolvase RuvX no data 36 93
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS07050 Holliday junction resolvase RuvX no data 32 94
  Phocaeicola dorei CL03T12C01 ABI39_RS20940 Holliday junction resolvase RuvX no data 32 94
  Rhodopseudomonas palustris CGA009 TX73_016100 Holliday junction resolvase RuvX no data 39 94
  Desulfovibrio vulgaris Hildenborough JW710 DVU3070 conserved hypothetical protein (TIGR) no data 31 93
  Desulfovibrio vulgaris Miyazaki F DvMF_2352 Holliday junction resolvase YqgF (RefSeq) no data 33 92
  Magnetospirillum magneticum AMB-1 AMB_RS08015 Holliday junction resolvase RuvX no data 31 94
  Xanthobacter sp. DMC5 GFF926 Putative pre-16S rRNA nuclease no data 36 93
  Agrobacterium fabrum C58 Atu1316 hypothetical protein no data 34 92
  Rhizobium sp. OAE497 ABIE40_RS07415 Holliday junction resolvase RuvX no data 30 92
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS00200 Holliday junction resolvase RuvX no data 31 94
  Sinorhizobium meliloti 1021 SMc01355 Holliday junction resolvase-like protein no data 28 92
  Fusobacterium nucleatum SB010 HUW76_04355 Holliday junction resolvase RuvX no data 24 96
  Bifidobacterium breve UCC2003 BBR_RS15065 Holliday junction resolvase RuvX no data 36 57
  Mycobacterium tuberculosis H37Rv Rv2554c Conserved protein no data 30 93