Homologs of PP_0069 from Pseudomonas putida KT2440

putative Rossmann fold nucleotide-binding protein
SEED: Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake
KEGG: DNA processing protein

139 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas putida KT2440 PP_0069 putative Rossmann fold nucleotide-binding protein sig. 100 100
o Pseudomonas sp. BP01 JOY50_RS08235 dprA DNA-processing protein DprA insig. 96 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_00227 hypothetical protein insig. 73 99
o Pseudomonas orientalis W4I3 QF045_RS03040 DNA-processing protein DprA insig. 74 98
o Pseudomonas fluorescens SBW25 PFLU_RS00100 DNA-protecting protein DprA cofit 74 97
o Pseudomonas fluorescens SBW25-INTG PFLU_RS00100 DNA-protecting protein DprA insig. 74 97
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1910 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake insig. 74 97
o Pseudomonas fluorescens FW300-N2E3 AO353_10650 DNA processing protein DprA insig. 72 99
o Pseudomonas fluorescens GW456-L13 PfGW456L13_648 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake insig. 72 98
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4125 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake insig. 72 98
o Pseudomonas sp. DMC3 GFF594 hypothetical protein cofit 72 98
o Pseudomonas fluorescens FW300-N2C3 AO356_11295 DNA processing protein DprA insig. 72 98
o Pseudomonas sp. SVBP6 COO64_RS02230 dprA DNA-processing protein DprA insig. 76 99
o Pseudomonas protegens RBAN4 FABNJH_00130 dprA DNA-processing protein DprA insig. 70 99
o Pseudomonas sp. RS175 PFR28_04659 hypothetical protein insig. 73 97
o Pseudomonas syringae pv. syringae B728a Psyr_0021 DNA protecting protein DprA insig. 71 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0021 DNA protecting protein DprA insig. 71 100
o Pseudomonas sp. S08-1 OH686_12505 DNA protecting protein DprA insig. 70 97
o Pseudomonas stutzeri RCH2 Psest_0025 DNA protecting protein DprA sig. 68 96
o Pseudomonas segetis P6 ACVTMO_RS01365 dprA DNA-processing protein DprA insig. 68 96
o Pseudomonas aeruginosa MRSN321 DY961_RS26305 dprA;go_process=DNA-mediated DNA-processing protein DprA insig. 70 97
o Pseudomonas aeruginosa PUPa3 DQ20_RS58710 dprA;go_process=DNA-mediated DNA-processing protein DprA sig. 70 97
o Pseudomonas aeruginosa PA14 IKLFDK_25455 DNA-processing protein DprA insig. 69 97
o Methylophilus sp. DMC18 GFF1494 hypothetical protein insig. 46 92
o Dickeya dadantii 3937 DDA3937_RS19120 DNA-protecting protein DprA insig. 43 94
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF2571 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake insig. 46 97
o Castellaniella sp019104865 MT123 ABCV34_RS14195 DNA-processing protein DprA insig. 44 95
o Dickeya dianthicola 67-19 HGI48_RS19210 DNA-protecting protein DprA insig. 42 97
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_12485 dprA DNA-protecting protein DprA cofit 48 76
o Dickeya dianthicola ME23 DZA65_RS20335 DNA-protecting protein DprA insig. 42 94
  Erwinia tracheiphila SCR3 LU632_RS22465 dprA DNA-protecting protein DprA insig. 48 76
o Escherichia coli ECOR27 NOLOHH_09335 dprA DNA-protecting protein DprA insig. 47 84
  Dechlorosoma suillum PS Dsui_0819 DNA protecting protein DprA cofit 51 78
o Ralstonia sp. UNC404CL21Col ABZR87_RS04985 DNA-processing protein DprA insig. 44 97
o Escherichia coli ECRC62 BNILDI_02185 dprA DNA-protecting protein DprA cofit 47 84
  Escherichia coli ECRC102 NIAGMN_15305 dprA DNA-protecting protein DprA insig. 49 78
  Escherichia coli ECRC98 JDDGAC_21165 dprA DNA-protecting protein DprA insig. 49 78
  Escherichia coli BL21 ECD_03136 DNA recombination-mediator A family protein insig. 49 78
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00418 hypothetical protein insig. 49 78
  Escherichia coli BW25113 b4473 smf hypothetical protein (NCBI) insig. 49 78
  Escherichia fergusonii Becca EFB2_00538 hypothetical protein insig. 49 78
  Escherichia coli ECOR38 HEPCGN_16365 dprA DNA-protecting protein DprA insig. 49 78
  Erwinia amylovora T8 OLJFJH_03705 DNA-protecting protein DprA insig. 46 79
  Escherichia coli Nissle 1917 ECOLIN_RS18860 DNA-protecting protein DprA insig. 49 78
  Escherichia coli ECRC101 MCAODC_08065 dprA DNA-protecting protein DprA insig. 49 78
  Marinobacter adhaerens HP15 HP15_3746 DNA protecting protein DprA insig. 49 79
  Escherichia coli ECRC99 KEDOAH_10605 dprA DNA-protecting protein DprA no data 49 78
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS09755 DNA-protecting protein DprA insig. 44 97
o Ralstonia solanacearum UW163 UW163_RS03825 DNA-protecting protein DprA insig. 44 97
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2393 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake insig. 49 76
  Kangiella aquimarina DSM 16071 B158DRAFT_0400 DNA protecting protein DprA insig. 56 62
  Klebsiella pneumoniae MRSN742743 KFA93_RS24750 dprA;go_process=DNA-mediated DNA-protecting protein DprA insig. 49 75
o Serratia liquefaciens MT49 IAI46_23260 DNA-protecting protein DprA insig. 45 80
o Klebsiella michiganensis M5al BWI76_RS25665 DNA-processing protein DprA insig. 45 82
o Pectobacterium carotovorum WPP14 HER17_RS02230 DNA-protecting protein DprA insig. 42 93
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS02925 DNA-processing protein DprA insig. 59 61
o Rhodanobacter denitrificans MT42 LRK55_RS09785 DNA-processing protein DprA insig. 44 93
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS10145 DNA-processing protein DprA sig. 44 93
o Cupriavidus basilensis FW507-4G11 RR42_RS20480 DNA processing protein DprA insig. 44 96
o Ralstonia solanacearum GMI1000 RS_RS00340 DNA-protecting protein DprA insig. 44 97
  Klebsiella pneumoniae MKP103 KDGMDA_06535 DNA-protecting protein DprA insig. 49 75
o Variovorax sp. OAS795 ABID97_RS01830 DNA-processing protein DprA insig. 43 97
  Escherichia coli ECRC100 OKFHMN_17535 dprA DNA-protecting protein DprA insig. 54 67
  Enterobacter asburiae PDN3 EX28DRAFT_0042 DNA protecting protein DprA insig. 48 76
  Pantoea sp. MT58 IAI47_02295 DNA-protecting protein DprA insig. 48 75
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS13870 DNA-processing protein DprA insig. 59 59
  Herbaspirillum seropedicae SmR1 HSERO_RS23400 DNA processing protein DprA insig. 49 78
  Rhodanobacter sp. FW510-T8 OKGIIK_13770 dprA DNA-processing protein DprA insig. 50 79
  Paraburkholderia sabiae LMG 24235 QEN71_RS00150 DNA-processing protein DprA insig. 48 79
o Ralstonia solanacearum PSI07 RPSI07_RS23610 DNA-protecting protein DprA sig. 43 97
  Shewanella sp. ANA-3 Shewana3_0037 DNA protecting protein DprA (RefSeq) insig. 46 76
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS02310 dprA DNA-protecting protein DprA cofit 47 76
  Enterobacter sp. TBS_079 MPMX20_04193 hypothetical protein insig. 48 74
  Shewanella oneidensis MR-1 SO0034 DNA processing protein DprA, putative (NCBI ptt file) insig. 45 76
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02242 DNA protecting protein DprA insig. 52 61
o Lysobacter sp. OAE881 ABIE51_RS02235 DNA-processing protein DprA insig. 42 90
  Burkholderia phytofirmans PsJN BPHYT_RS01450 DNA-binding protein insig. 50 61
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS04240 DNA-processing protein DprA insig. 42 94
  Vibrio cholerae E7946 ATCC 55056 CSW01_00245 DNA-protecting protein DprA insig. 50 69
  Acidovorax sp. GW101-3H11 Ac3H11_4411 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake insig. 41 97
  Paraburkholderia graminis OAS925 ABIE53_000387 DNA processing protein insig. 50 61
  Acinetobacter radioresistens SK82 MPMX26_00114 hypothetical protein insig. 40 94
  Variovorax sp. SCN45 GFF5489 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake insig. 47 74
o Acinetobacter baumannii LAC-4 RR41_RS18085 DNA-processing protein DprA insig. 37 94
  Alteromonas macleodii MIT1002 MIT1002_00022 DNA protecting protein DprA insig. 48 61
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4746.1 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake insig. 43 90
  Shewanella loihica PV-4 Shew_3734 DNA protecting protein DprA (RefSeq) insig. 46 73
o Shewanella amazonensis SB2B Sama_0045 DNA processing protein DprA, putative (RefSeq) insig. 42 81
  Rahnella sp. WP5 EX31_RS15970 DNA-protecting protein DprA cofit 41 77
o Rhodopseudomonas palustris CGA009 TX73_016135 DNA-processing protein DprA insig. 42 95
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2448 DNA protecting protein DprA insig. 46 78
o Azospirillum brasilense Sp245 AZOBR_RS15885 DNA processing protein DprA insig. 40 93
  Magnetospirillum magneticum AMB-1 AMB_RS03500 DNA-protecting protein DprA cofit 48 77
  Bosea sp. OAE506 ABIE41_RS17215 DNA-processing protein DprA insig. 42 89
  Sphingobium sp. HT1-2 GFF113 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake cofit 45 78
o Xanthobacter sp. DMC5 GFF932 hypothetical protein insig. 43 93
  Caulobacter crescentus NA1000 CCNA_02529 DNA recombination-mediator protein A, SMF family insig. 40 92
  Caulobacter crescentus NA1000 Δfur CCNA_02529 DNA recombination-mediator protein A, SMF family insig. 40 92
o Azospirillum sp. SherDot2 MPMX19_01508 hypothetical protein insig. 37 95
  Desulfovibrio vulgaris Miyazaki F DvMF_0771 DNA protecting protein DprA (RefSeq) insig. 44 78
o Phaeobacter inhibens DSM 17395 PGA1_c06230 putative protein Smf insig. 38 98
  Synechococcus elongatus PCC 7942 Synpcc7942_0703 smf DNA processing protein DprA, putative insig. 38 89
  Agrobacterium fabrum C58 Atu1305 DNA processing chain A insig. 40 82
  Desulfovibrio vulgaris Hildenborough JW710 DVU2069 dprA DNA processing protein DprA, putative (TIGR) insig. 47 78
  Rhizobium sp. OAE497 ABIE40_RS07365 DNA-processing protein DprA insig. 37 93
  Dinoroseobacter shibae DFL-12 Dshi_1138 DNA protecting protein DprA (RefSeq) insig. 40 93
  Sinorhizobium meliloti 1021 SMc01363 hypothetical protein insig. 42 77
  Rhodospirillum rubrum S1H Rru_A3194 SMF protein (NCBI) insig. 37 96
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3854 DNA protecting protein DprA insig. 34 95
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS04370 DNA protecting protein DprA insig. 35 74
  Synechocystis sp000284455 PCC 6803 SGL_RS05985 DNA-processing protein DprA insig. 36 76
  Phocaeicola dorei CL03T12C01 ABI39_RS05220 DNA-processing protein DprA insig. 35 79
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_06145 DNA protecting protein DprA insig. 33 94
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS11685 DNA-protecting protein DprA insig. 34 79
  Fusobacterium nucleatum SB010 HUW76_06810 DNA-protecting protein DprA strong 32 76
  Bacteroides stercoris CC31F HMPREF1181_RS01510 DNA-protecting protein DprA insig. 32 91
  Bacteroides thetaiotaomicron VPI-5482 BT3070 Smf protein DNA processing chain A (NCBI ptt file) insig. 32 90
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05335 DNA-processing protein DprA insig. 31 90
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS13955 DNA-processing protein DprA insig. 30 91
  Bacteroides ovatus ATCC 8483 BACOVA_02721 DNA protecting protein DprA insig. 31 84
  Cellulophaga baltica 18 M666_RS05300 DNA-processing protein DprA insig. 29 79
  Pseudomonas aeruginosa PUPa3 DQ20_RS60845 DNA-processing protein DprA no data 37 45
  Bifidobacterium breve UCC2003 BBR_RS14565 DNA-processing protein DprA insig. 38 56
  Bifidobacterium breve UCC2003 BBR_RS18365 DNA-processing protein DprA no data 37 45
  Mycobacterium tuberculosis H37Rv Rv2896c Conserved hypothetical protein insig. 36 69
  Fusobacterium nucleatum SB010 HUW76_07255 DNA-protecting protein DprA cofit 26 63
  Bacteroides ovatus ATCC 8483 BACOVA_02336 putative DNA protecting protein DprA strong 25 68
  Escherichia coli ECOR38 HEPCGN_15680 smf DNA processing protein DprA insig. 34 49
  Escherichia coli ECRC100 OKFHMN_16865 smf DNA processing protein DprA insig. 34 49
  Escherichia coli ECRC101 MCAODC_07395 smf DNA processing protein DprA insig. 34 49
  Escherichia coli ECRC102 NIAGMN_14635 smf DNA processing protein DprA insig. 34 49
  Escherichia coli ECRC98 JDDGAC_20495 smf DNA processing protein DprA insig. 34 49
  Escherichia coli ECRC99 KEDOAH_11275 smf DNA processing protein DprA no data 34 49
  Escherichia coli ECOR27 NOLOHH_08655 smf DNA processing protein DprA insig. 34 49
  Escherichia coli Nissle 1917 ECOLIN_RS19655 DNA-processing protein DprA insig. 34 49
  Pseudomonas syringae pv. syringae B728a Psyr_3805 hypothetical protein sig. 33 48
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3805 hypothetical protein insig. 33 48
  Klebsiella michiganensis M5al BWI76_RS26225 DNA processing protein DprA insig. 33 50
  Acinetobacter baumannii LAC-4 RR41_RS09535 DNA-processing protein DprA no data 31 49