Homologs of MMP_RS08690 from Methanococcus maripaludis S2

RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5
SEED: tRNA pseudouridine 55 synthase (EC 4.2.1.70)
KEGG: tRNA pseudouridine synthase B

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Methanococcus maripaludis S2 MMP_RS08690 RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 strong 100 100
o Methanococcus maripaludis JJ MMJJ_RS05675 RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 strong 97 95
  Pseudomonas sp. BP01 JOY50_RS26845 truB tRNA pseudouridine(55) synthase TruB insig. 33 66
  Pseudomonas putida KT2440 PP_4710 tRNA pseudouridine 55 synthase strong 33 66
  Pseudomonas sp. RS175 PFR28_00092 tRNA pseudouridine synthase B no data 35 60
  Pseudomonas stutzeri RCH2 Psest_0983 tRNA pseudouridine 55 synthase no data 32 66
  Pseudomonas fluorescens FW300-N2E3 AO353_05550 pseudouridine synthase strong 34 60
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) strong 34 60
  Pseudomonas segetis P6 ACVTMO_RS05965 truB tRNA pseudouridine(55) synthase TruB strong 34 61
  Pseudomonas sp. SVBP6 COO64_RS15160 truB tRNA pseudouridine(55) synthase TruB sig. 34 60
  Pseudomonas fluorescens FW300-N2C3 AO356_07400 pseudouridine synthase strong 34 60
  Pseudomonas sp. DMC3 GFF4990 tRNA pseudouridine synthase B cofit 33 61
  Pseudomonas orientalis W4I3 QF045_RS26215 tRNA pseudouridine(55) synthase TruB cofit 34 60
  Pseudomonas simiae WCS417 PS417_23960 pseudouridine synthase no data 34 60
  Pseudomonas sp. S08-1 OH686_17155 tRNA pseudouridine(55) synthase cofit 32 66
  Pseudomonas lactucae CFBP13502 GEMAOFIL_04943 tRNA pseudouridine synthase B cofit 34 60
  Pseudomonas fluorescens GW456-L13 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) strong 34 60
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1159 tRNA pseudouridine synthase B (EC 4.2.1.70) insig. 34 60
  Pseudomonas syringae pv. syringae B728a Psyr_4178 tRNA pseudouridine synthase B strong 33 60
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4178 tRNA pseudouridine synthase B strong 33 60
  Pseudomonas aeruginosa MRSN321 DY961_RS09455 truB;go_function=pseudouridylate tRNA pseudouridine(55) synthase TruB strong 30 66
  Pseudomonas fluorescens SBW25 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB strong 34 60
  Pseudomonas fluorescens SBW25-INTG PFLU_RS25800 tRNA pseudouridine(55) synthase TruB strong 34 60
  Pseudomonas aeruginosa PA14 IKLFDK_29890 tRNA pseudouridine(55) synthase TruB strong 30 66
  Pseudomonas aeruginosa PUPa3 DQ20_RS52580 truB;go_function=pseudouridylate tRNA pseudouridine(55) synthase TruB strong 30 66
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS01035 tRNA pseudouridine(55) synthase TruB strong 30 70
  Dechlorosoma suillum PS Dsui_2720 tRNA pseudouridine 55 synthase cofit 30 69
  Lysobacter sp. OAE881 ABIE51_RS08405 tRNA pseudouridine(55) synthase TruB cofit 29 66
  Rhodopseudomonas palustris CGA009 TX73_002255 tRNA pseudouridine(55) synthase TruB cofit 31 62
  Rhodanobacter denitrificans MT42 LRK55_RS00810 tRNA pseudouridine(55) synthase TruB cofit 30 70
  Azospirillum sp. SherDot2 MPMX19_02524 tRNA pseudouridine synthase B cofit 32 67
  Phaeobacter inhibens DSM 17395 PGA1_c32950 tRNA pseudouridine synthase B strong 33 65
  Marinobacter adhaerens HP15 HP15_3065 tRNA pseudouridine synthase B insig. 33 52
  Xanthobacter sp. DMC5 GFF2293 tRNA pseudouridine synthase B insig. 31 62
  Dinoroseobacter shibae DFL-12 Dshi_3042 tRNA pseudouridine synthase B (RefSeq) sig. 34 62
  Bosea sp. OAE506 ABIE41_RS04565 tRNA pseudouridine(55) synthase TruB sig. 33 57
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS09080 tRNA pseudouridine(55) synthase TruB insig. 30 69
  Herbaspirillum seropedicae SmR1 HSERO_RS17985 tRNA pseudouridine synthase B sig. 30 67
  Paraburkholderia graminis OAS925 ABIE53_001832 tRNA pseudouridine55 synthase sig. 28 77
  Kangiella aquimarina DSM 16071 B158DRAFT_0108 tRNA pseudouridine 55 synthase strong 27 71
  Agrobacterium fabrum C58 Atu0085 tRNA pseudouridine 55 synthase strong 32 63
  Caulobacter crescentus NA1000 CCNA_00035 tRNA pseudouridine synthase B strong 30 63
  Caulobacter crescentus NA1000 Δfur CCNA_00035 tRNA pseudouridine synthase B cofit 30 63
  Acinetobacter radioresistens SK82 MPMX26_02778 tRNA pseudouridine synthase B cofit 28 66
  Mycobacterium tuberculosis H37Rv Rv2793c Probable tRNA pseudouridine synthase B TruB (tRNA pseudouridine 55 synthase) (PSI55 synthase) (pseudouridylate synthase) (uracil hydrolyase) insig. 33 52
  Rhodanobacter sp. FW510-T8 OKGIIK_05860 truB tRNA pseudouridine(55) synthase TruB insig. 31 68
  Cupriavidus basilensis FW507-4G11 RR42_RS12835 tRNA pseudouridine synthase B sig. 30 66
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05106 tRNA pseudouridine synthase B sig. 30 66
  Alteromonas macleodii MIT1002 MIT1002_01773 tRNA pseudouridine synthase B insig. 26 79
  Burkholderia phytofirmans PsJN BPHYT_RS08080 tRNA pseudouridine synthase B sig. 30 68
  Rhodospirillum rubrum S1H Rru_A3783 tRNA pseudouridine synthase B (NCBI) cofit 30 66
  Synechococcus elongatus PCC 7942 Synpcc7942_1222 truB tRNA pseudouridine synthase B strong 31 64
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4345 tRNA pseudouridine synthase B (EC 4.2.1.70) cofit 30 60
  Acinetobacter baumannii LAC-4 RR41_RS01740 tRNA pseudouridine(55) synthase TruB insig. 28 69
  Magnetospirillum magneticum AMB-1 AMB_RS20810 tRNA pseudouridine(55) synthase TruB insig. 34 53
  Paraburkholderia sabiae LMG 24235 QEN71_RS23090 tRNA pseudouridine(55) synthase TruB sig. 29 68
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS02015 tRNA pseudouridine(55) synthase TruB sig. 30 58
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS16155 tRNA pseudouridine(55) synthase TruB strong 33 56
  Ralstonia solanacearum GMI1000 RS_RS06470 tRNA pseudouridine(55) synthase TruB insig. 28 75
  Ralstonia solanacearum UW163 UW163_RS13150 tRNA pseudouridine(55) synthase TruB insig. 30 67
  Vibrio cholerae E7946 ATCC 55056 CSW01_03400 tRNA pseudouridine(55) synthase TruB insig. 27 68
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS15690 tRNA pseudouridine(55) synthase TruB insig. 30 67
  Methylophilus sp. DMC18 GFF2846 tRNA pseudouridine synthase B insig. 27 68
  Sinorhizobium meliloti 1021 SMc00321 tRNA pseudouridine synthase B strong 31 53
  Variovorax sp. OAS795 ABID97_RS16475 tRNA pseudouridine(55) synthase TruB sig. 33 52
  Ralstonia solanacearum PSI07 RPSI07_RS17665 tRNA pseudouridine(55) synthase TruB insig. 28 78
  Castellaniella sp019104865 MT123 ABCV34_RS02135 tRNA pseudouridine(55) synthase TruB cofit 30 52
  Dickeya dianthicola 67-19 HGI48_RS03250 tRNA pseudouridine(55) synthase TruB cofit 30 52
  Shewanella loihica PV-4 Shew_2825 tRNA pseudouridine synthase B (RefSeq) sig. 30 52
  Shewanella amazonensis SB2B Sama_0963 pseudouridylate synthase (RefSeq) sig. 31 49
  Dickeya dadantii 3937 DDA3937_RS03080 tRNA pseudouridine(55) synthase TruB cofit 31 47
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_04640 tRNA pseudouridine(55) synthase sig. 31 52
  Dickeya dianthicola ME23 DZA65_RS03245 tRNA pseudouridine(55) synthase TruB cofit 30 52
  Pectobacterium carotovorum WPP14 HER17_RS18200 tRNA pseudouridine(55) synthase TruB insig. 28 59
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2004.1 tRNA pseudouridine synthase B (EC 4.2.1.70) insig. 28 62
  Rhizobium sp. OAE497 ABIE40_RS00345 tRNA pseudouridine(55) synthase TruB sig. 28 63
  Variovorax sp. SCN45 GFF220 tRNA pseudouridine(55) synthase (EC 5.4.99.25) insig. 32 52
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1500 tRNA pseudouridine synthase B (EC 4.2.1.70) strong 29 52
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS09110 tRNA pseudouridine(55) synthase TruB cofit 26 70
  Shewanella sp. ANA-3 Shewana3_1032 tRNA pseudouridine synthase B (RefSeq) strong 29 52
  Rahnella sp. WP5 EX31_RS08530 tRNA pseudouridine(55) synthase TruB cofit 27 56
  Ralstonia sp. UNC404CL21Col ABZR87_RS11220 tRNA pseudouridine(55) synthase TruB strong 32 50
  Pantoea sp. MT58 IAI47_17015 tRNA pseudouridine(55) synthase TruB insig. 24 70
  Escherichia coli ECRC101 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB cofit 29 47
  Enterobacter asburiae PDN3 EX28DRAFT_3217 tRNA pseudouridine(55) synthase cofit 29 52
  Klebsiella michiganensis M5al BWI76_RS25080 tRNA pseudouridine(55) synthase strong 29 52
  Serratia liquefaciens MT49 IAI46_01945 tRNA pseudouridine(55) synthase TruB cofit 29 47
  Klebsiella pneumoniae MKP103 KDGMDA_05890 tRNA pseudouridine(55) synthase TruB cofit 29 52
  Escherichia fergusonii Becca EFB2_00657 tRNA pseudouridine synthase B insig. 29 47
  Escherichia coli BL21 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase strong 29 47
  Escherichia coli ECOR38 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB strong 29 47
  Escherichia coli ECRC100 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB cofit 29 47
  Escherichia coli ECRC102 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB insig. 29 47
  Escherichia coli ECRC98 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB cofit 29 47
  Escherichia coli ECRC99 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB no data 29 47
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00534 tRNA pseudouridine synthase B insig. 29 47
  Escherichia coli Nissle 1917 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB strong 29 47
  Escherichia coli BW25113 b3166 truB tRNA pseudouridine synthase B (NCBI) strong 29 47
  Enterobacter sp. TBS_079 MPMX20_04071 tRNA pseudouridine synthase B sig. 29 52
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2142 tRNA pseudouridine(55) synthase insig. 28 67