Homologs of MMP_RS05225 from Methanococcus maripaludis S2

RluA family pseudouridine synthase
SEED: Similar to ribosomal large subunit pseudouridine synthase D, group RluD10
KEGG: ribosomal large subunit pseudouridine synthase D

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Methanococcus maripaludis S2 MMP_RS05225 RluA family pseudouridine synthase insig. 100 100
o Methanococcus maripaludis JJ MMJJ_RS09155 RluA family pseudouridine synthase insig. 90 100
o Sphingobium sp. HT1-2 GFF4062 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) cofit 33 98
o Rhodospirillum rubrum S1H Rru_A1111 Pseudouridine synthase, RluD (NCBI) strong 34 95
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_15205 RNA pseudouridine synthase strong 34 87
  Dechlorosoma suillum PS Dsui_2530 pseudouridine synthase, RluA family sig. 33 95
o Cellulophaga baltica 18 M666_RS09010 RluA family pseudouridine synthase sig. 34 88
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1362.1 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) sig. 31 96
o Fusobacterium nucleatum SB010 HUW76_08575 RluA family pseudouridine synthase strong 35 100
o Phaeobacter inhibens DSM 17395 PGA1_c09000 ribosomal large subunit pseudouridine synthase D strong 32 90
o Magnetospirillum magneticum AMB-1 AMB_RS16095 RluA family pseudouridine synthase insig. 32 100
o Lysobacter sp. OAE881 ABIE51_RS04885 23S rRNA pseudouridine(1911/1915/1917) synthase RluD cofit 29 98
o Azospirillum sp. SherDot2 MPMX19_05442 Ribosomal large subunit pseudouridine synthase D strong 32 99
o Serratia liquefaciens MT49 IAI46_03985 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 33 99
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS03985 RluA family pseudouridine synthase sig. 35 85
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS16540 23S rRNA pseudouridine(1911/1915/1917) synthase RluD cofit 32 99
o Klebsiella michiganensis M5al BWI76_RS21450 23S rRNA pseudouridine(1911/1915/1917) synthase sig. 32 99
o Pectobacterium carotovorum WPP14 HER17_RS05400 23S rRNA pseudouridine(1911/1915/1917) synthase RluD sig. 34 99
o Methylophilus sp. DMC18 GFF1213 Ribosomal large subunit pseudouridine synthase D insig. 33 98
o Enterobacter sp. TBS_079 MPMX20_03463 Ribosomal large subunit pseudouridine synthase D strong 32 99
o Alteromonas macleodii MIT1002 MIT1002_02679 Ribosomal large subunit pseudouridine synthase D cofit 32 98
o Pantoea sp. MT58 IAI47_04425 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 32 99
o Acinetobacter baumannii LAC-4 RR41_RS15070 23S rRNA pseudouridine(1911/1915/1917) synthase RluD insig. 32 98
o Erwinia amylovora T8 OLJFJH_09725 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 33 99
o Vibrio cholerae E7946 ATCC 55056 CSW01_03695 ribosomal large subunit pseudouridine synthase D strong 32 98
o Enterobacter asburiae PDN3 EX28DRAFT_2695 pseudouridine synthase, RluA family cofit 32 99
o Bacteroides thetaiotaomicron VPI-5482 BT3712 ribosomal large subunit pseudouridine synthase D (NCBI ptt file) strong 33 94
o Klebsiella pneumoniae MKP103 KDGMDA_02140 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 32 99
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0642 pseudouridine synthase, RluA family strong 31 98
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS08615 RluA family pseudouridine synthase strong 34 90
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS14415 pseudouridine synthase strong 34 87
o Escherichia coli ECOR38 HEPCGN_20375 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 31 99
o Phocaeicola dorei CL03T12C01 ABI39_RS02845 RluA family pseudouridine synthase strong 34 90
o Dickeya dianthicola ME23 DZA65_RS17330 23S rRNA pseudouridine(1911/1915/1917) synthase RluD cofit 33 99
o Dickeya dadantii 3937 DDA3937_RS16110 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 33 99
o Dickeya dianthicola 67-19 HGI48_RS16235 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 33 99
o Rahnella sp. WP5 EX31_RS07570 23S rRNA pseudouridine(1911/1915/1917) synthase RluD cofit 32 99
o Pseudomonas putida KT2440 PP_0623 23S rRNA pseudouridine(1911,1915,1917) synthase no data 31 97
o Escherichia coli BL21 ECD_02484 23S rRNA pseudouridine(1911,1915,1917) synthase strong 31 99
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01112 Ribosomal large subunit pseudouridine synthase D sig. 31 99
o Escherichia coli BW25113 b2594 rluD 23S rRNA pseudouridine synthase (NCBI) no data 31 99
o Bacteroides ovatus ATCC 8483 BACOVA_03528 pseudouridine synthase, RluA family strong 32 94
o Escherichia coli ECRC100 OKFHMN_21250 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD cofit 30 99
o Escherichia coli ECRC101 MCAODC_11780 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 30 99
o Escherichia coli ECRC102 NIAGMN_19020 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 30 99
o Escherichia coli ECRC98 JDDGAC_24915 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 30 99
o Escherichia coli ECRC99 KEDOAH_06970 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD no data 30 99
o Escherichia fergusonii Becca EFB2_01296 Ribosomal large subunit pseudouridine synthase D sig. 30 99
o Escherichia coli Nissle 1917 ECOLIN_RS14675 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 30 99
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_26870 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 32 99
o Erwinia tracheiphila SCR3 LU632_RS16945 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD sig. 32 99
o Escherichia coli ECOR27 NOLOHH_12925 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD cofit 30 99
o Escherichia coli ECRC62 BNILDI_11730 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 30 99
o Sinorhizobium meliloti 1021 SMc00647 ribosomal large subunit pseudouridine synthase strong 32 90
o Pseudomonas sp. BP01 JOY50_RS27130 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD sig. 31 97
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0664 pseudouridine synthase, RluA family strong 35 74
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4182 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) strong 31 99
o Rhizobium sp. OAE497 ABIE40_RS14790 RluA family pseudouridine synthase sig. 33 90
o Rhodanobacter denitrificans MT42 LRK55_RS04745 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 31 95
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS04965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 31 95
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS12640 RluA family pseudouridine synthase strong 32 91
o Pseudomonas sp. S08-1 OH686_16410 LSU rRNA pseudouridine(1911/1915/1917) synthase cofit 30 98
o Agrobacterium fabrum C58 Atu2443 ribosomal large subunit pseudouridine synthase, RluD subfamily no data 32 90
o Rhodanobacter sp. FW510-T8 OKGIIK_01790 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 31 95
o Pseudomonas segetis P6 MPMX49_03922 Ribosomal large subunit pseudouridine synthase D strong 31 98
o Xanthobacter sp. DMC5 GFF2508 Ribosomal large subunit pseudouridine synthase D insig. 31 98
o Bacteroides stercoris CC31F HMPREF1181_RS03250 RluA family pseudouridine synthase strong 31 90
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS10965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 29 97
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS05045 23S rRNA pseudouridine(1911/1915/1917) synthase RluD no data 31 95
  Fusobacterium nucleatum SB010 HUW76_06230 RluA family pseudouridine synthase cofit 41 74
o Pseudomonas sp. SVBP6 COO64_RS11055 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD sig. 30 98
o Caulobacter crescentus NA1000 CCNA_00485 ribosomal large subunit pseudouridine synthase D strong 29 96
o Caulobacter crescentus NA1000 Δfur CCNA_00485 ribosomal large subunit pseudouridine synthase D cofit 29 96
  Acidovorax sp. GW101-3H11 Ac3H11_1787 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) sig. 29 90
o Pseudomonas stutzeri RCH2 Psest_0709 pseudouridine synthase, RluA family strong 30 98
o Pseudomonas aeruginosa PA14 IKLFDK_00810 23S rRNA pseudouridine(1911/1915/1917) synthase RluD cofit 29 96
o Kangiella aquimarina DSM 16071 B158DRAFT_2532 Pseudouridylate synthases, 23S RNA-specific strong 32 100
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS10060 RluA family pseudouridine synthase insig. 29 98
  Burkholderia phytofirmans PsJN BPHYT_RS09135 ribosomal large subunit pseudouridine synthase D sig. 29 97
  Paraburkholderia sabiae LMG 24235 QEN71_RS22215 RluA family pseudouridine synthase no data 28 97
  Synechococcus elongatus PCC 7942 Synpcc7942_1112 ribosomal large subunit pseudouridine synthase D strong 36 75
o Acinetobacter radioresistens SK82 MPMX26_00735 Ribosomal large subunit pseudouridine synthase D strong 36 90
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4870 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) sig. 29 86
o Pseudomonas fluorescens SBW25 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD insig. 31 98
o Pseudomonas fluorescens SBW25-INTG PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 31 98
o Pseudomonas lactucae CFBP13502 GEMAOFIL_00969 Ribosomal large subunit pseudouridine synthase D cofit 31 98
o Pseudomonas fluorescens FW300-N2E3 AO353_14220 ribosomal large subunit pseudouridine synthase D strong 30 98
o Pseudomonas fluorescens FW300-N2C3 AO356_15925 ribosomal large subunit pseudouridine synthase D strong 29 98
o Pseudomonas simiae WCS417 PS417_03820 ribosomal large subunit pseudouridine synthase D no data 30 98
  Desulfovibrio vulgaris Hildenborough JW710 DVU1024 rluD/coaE ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase (TIGR) insig. 27 96
o Shewanella sp. ANA-3 Shewana3_3171 ribosomal large subunit pseudouridine synthase D (RefSeq) strong 31 94
o Pseudomonas sp. DMC3 GFF4004 Ribosomal large subunit pseudouridine synthase D cofit 30 98
o Rhodopseudomonas palustris CGA009 TX73_001905 RluA family pseudouridine synthase strong 34 74
o Shewanella loihica PV-4 Shew_2950 RluA family pseudouridine synthase (RefSeq) strong 30 94
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00848 ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-) insig. 28 97
o Bosea sp. OAE506 ABIE41_RS05635 RluA family pseudouridine synthase sig. 31 94
o Pseudomonas syringae pv. syringae B728a Psyr_0726 ribosomal large subunit pseudouridine synthase D strong 30 98
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0726 ribosomal large subunit pseudouridine synthase D strong 30 98
  Cupriavidus basilensis FW507-4G11 RR42_RS07590 pseudouridine synthase strong 28 100
o Pseudomonas sp. RS175 PFR28_03748 Ribosomal large subunit pseudouridine synthase D strong 30 95