| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Methanococcus maripaludis S2 | MMP_RS02510 | | site-specific integrase | sig. | 100 | 100 |
| o | Methanococcus maripaludis JJ | MMJJ_RS04325 | | tyrosine-type recombinase/integrase | insig. | 59 | 94 |
| | Methanococcus maripaludis JJ | MMJJ_RS02430 | | tyrosine-type recombinase/integrase | no data | 53 | 99 |
| | Methanococcus maripaludis S2 | MMP_RS03885 | | tyrosine-type recombinase/integrase | insig. | 52 | 100 |
| | Methanococcus maripaludis JJ | MMJJ_RS02375 | | site-specific integrase | insig. | 49 | 94 |
| | Methanococcus maripaludis JJ | MMJJ_RS01095 | | site-specific integrase | insig. | 33 | 91 |
| | Shewanella oneidensis MR-1 | SO2037 | | site-specific recombinase, phage integrase family (NCBI ptt file) | insig. | 23 | 88 |
| o | Paraburkholderia sabiae LMG 24235 | QEN71_RS44370 | | site-specific integrase | insig. | 27 | 83 |
| | Kangiella aquimarina DSM 16071 | B158DRAFT_0342 | | integron integrase | insig. | 25 | 77 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0028 | | Site-specific recombinase XerD | no data | 26 | 87 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_2549 | | Site-specific recombinase XerD | no data | 26 | 87 |
| o | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_4348 | | Site-specific recombinase XerD | no data | 26 | 87 |
| o | Castellaniella sp019104865 MT123 | ABCV34_RS00515 | | site-specific tyrosine recombinase XerD | strong | 25 | 85 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS42770 | | site-specific integrase | insig. | 27 | 75 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3629 | | integrase family protein (RefSeq) | no data | 27 | 86 |
| o | Dinoroseobacter shibae DFL-12 | Dshi_3661 | | integrase family protein (RefSeq) | no data | 27 | 86 |
| o | Marinobacter adhaerens HP15 | HP15_762 | | site-specific tyrosine recombinase XerD | insig. | 26 | 87 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS42900 | | site-specific integrase | no data | 27 | 78 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS39870 | | tyrosine-type recombinase/integrase | insig. | 27 | 88 |
| | Shewanella amazonensis SB2B | Sama_1355 | | phage integrase family site specific recombinase (RefSeq) | insig. | 24 | 79 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS02835 | | integrase | strong | 27 | 70 |
| o | Pseudomonas segetis P6 | ACVTMO_RS07795 | xerD | site-specific tyrosine recombinase XerD | strong | 25 | 93 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS39850 | | site-specific integrase | no data | 26 | 75 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS42300 | | site-specific integrase | no data | 26 | 75 |
| | Acinetobacter baumannii LAC-4 | RR41_RS17765 | | site-specific tyrosine recombinase XerD | no data | 31 | 57 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_02123 | | tyrosine recombinase XerD | strong | 25 | 77 |
| | Acinetobacter radioresistens SK82 | MPMX26_00169 | | Tyrosine recombinase XerD | no data | 32 | 52 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS16135 | | site-specific integrase | insig. | 26 | 72 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_00325 | | class 1 integron integrase IntI1 | no data | 24 | 76 |
| | Sphingobium sp. HT1-2 | GFF5327 | | Integron integrase IntI1 | insig. | 24 | 76 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS44560 | | site-specific integrase | no data | 26 | 75 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS08890 | | site-specific integrase | insig. | 26 | 80 |
| | Shewanella amazonensis SB2B | Sama_2739 | | integrase/recombinase XerD (RefSeq) | strong | 25 | 92 |
| o | Dechlorosoma suillum PS | Dsui_1217 | | tyrosine recombinase XerD | cofit | 25 | 85 |
| o | Vibrio cholerae E7946 ATCC 55056 | CSW01_12250 | | site-specific tyrosine recombinase XerD | strong | 24 | 84 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_3270 | | Site-specific recombinase XerD | insig. | 27 | 87 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS07000 | | site-specific tyrosine recombinase XerD | sig. | 24 | 69 |
| | Bosea sp. OAE506 | ABIE41_RS00515 | | tyrosine-type recombinase/integrase | insig. | 31 | 47 |
| | Methylophilus sp. DMC18 | GFF2342 | | Tyrosine recombinase XerD | insig. | 25 | 87 |
| | Variovorax sp. OAS795 | ABID97_RS20265 | | site-specific tyrosine recombinase XerD | insig. | 21 | 93 |
| | Dickeya dianthicola 67-19 | HGI48_RS03440 | | site-specific tyrosine recombinase XerD | insig. | 29 | 58 |
| | Dickeya dianthicola ME23 | DZA65_RS03485 | | site-specific tyrosine recombinase XerD | no data | 29 | 58 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS09520 | | site-specific tyrosine recombinase XerD | sig. | 25 | 87 |
| | Dickeya dadantii 3937 | DDA3937_RS03300 | | site-specific tyrosine recombinase XerD | insig. | 28 | 58 |
| o | Rhodospirillum rubrum S1H | Rru_A1220 | | Phage integrase (NCBI) | no data | 25 | 89 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS10885 | | tyrosine recombinase XerC | strong | 25 | 89 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS04705 | | site-specific tyrosine recombinase XerD | strong | 24 | 84 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS01250 | | site-specific tyrosine recombinase XerD | insig. | 24 | 84 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS44390 | | site-specific integrase | insig. | 24 | 72 |
| | Variovorax sp. SCN45 | GFF2772 | | Site-specific tyrosine recombinase XerD | strong | 22 | 93 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS09680 | | site-specific tyrosine recombinase XerD | strong | 23 | 69 |
| | Kangiella aquimarina DSM 16071 | B158DRAFT_2265 | | tyrosine recombinase XerD | strong | 22 | 81 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS05140 | | site-specific tyrosine recombinase XerD | insig. | 25 | 85 |
| | Ralstonia solanacearum UW163 | UW163_RS08485 | | site-specific tyrosine recombinase XerD | insig. | 25 | 85 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3700 | | integrase family protein (RefSeq) | insig. | 27 | 51 |
| | Pseudomonas sp. RS175 | PFR28_00331 | | Tyrosine recombinase XerD | strong | 26 | 73 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS12160 | | site-specific tyrosine recombinase XerD | insig. | 23 | 85 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_00850 | | site-specific tyrosine recombinase XerD | no data | 22 | 81 |
| | Pseudomonas simiae WCS417 | PS417_22895 | | tyrosine recombinase XerD | strong | 29 | 56 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_1286 | | tyrosine recombinase XerD subunit | sig. | 28 | 56 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_1286 | | tyrosine recombinase XerD subunit | sig. | 28 | 56 |
| | Alteromonas macleodii MIT1002 | MIT1002_00786 | | Tyrosine recombinase XerD | insig. | 25 | 84 |
| | Pectobacterium carotovorum WPP14 | HER17_RS01350 | | tyrosine recombinase XerC | strong | 23 | 76 |
| | Shewanella loihica PV-4 | Shew_0770 | | tyrosine recombinase XerD (RefSeq) | strong | 25 | 80 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3145 | | Tyrosine recombinase XerD | no data | 26 | 73 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT2843 | | integrase (NCBI ptt file) | strong | 24 | 69 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04729 | | Tyrosine recombinase XerD | cofit | 29 | 56 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0827 | | Site-specific recombinase XerD | insig. | 26 | 71 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS24560 | | site-specific tyrosine recombinase XerD | sig. | 28 | 56 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS24560 | | site-specific tyrosine recombinase XerD | strong | 28 | 56 |
| o | Rhodopseudomonas palustris CGA009 | TX73_000945 | | tyrosine recombinase XerC | sig. | 22 | 88 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_04365 | | recombinase XerD | strong | 30 | 58 |
| | Cellulophaga baltica 18 | M666_RS09150 | | tyrosine-type recombinase/integrase | sig. | 26 | 70 |
| | Shewanella oneidensis MR-1 | SO2528 | | site-specific recombinase, phage integrase family (NCBI ptt file) | no data | 25 | 88 |
| | Shewanella oneidensis MR-1 | SO2036 | | site-specific recombinase, phage integrase family (NCBI ptt file) | no data | 25 | 88 |
| | Ralstonia solanacearum GMI1000 | RS_RS12755 | | tyrosine recombinase XerD | no data | 22 | 85 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU2066 | xerC | site-specific recombinase, phage integrase family (TIGR) | sig. | 31 | 47 |
| | Pseudomonas orientalis W4I3 | QF045_RS25085 | | site-specific tyrosine recombinase XerD | cofit | 28 | 56 |
| | Pseudomonas stutzeri RCH2 | Psest_3129 | | tyrosine recombinase XerD | insig. | 28 | 56 |
| o | Rhizobium sp. OAE497 | ABIE40_RS17685 | | site-specific tyrosine recombinase XerD | sig. | 25 | 87 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_2945 | | tyrosine recombinase XerD | insig. | 30 | 48 |
| o | Azospirillum brasilense Sp245 | AZOBR_RS03240 | | recombinase XerD | insig. | 25 | 81 |
| | Pseudomonas sp. S08-1 | OH686_17750 | | tyrosine recombinase XerD | insig. | 26 | 72 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS17800 | | tyrosine-type recombinase/integrase | insig. | 31 | 47 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_15560 | | Integrase | insig. | 20 | 80 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_06385 | | recombinase XerD | strong | 24 | 73 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3011 | | Tyrosine recombinase XerD | insig. | 31 | 51 |
| | Escherichia coli ECOR38 | HEPCGN_21670 | ipuB | tyrosine-type DNA invertase IpuB | insig. | 29 | 54 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS13605 | | tyrosine-type DNA invertase IpuB | no data | 29 | 54 |
| | Lysobacter sp. OAE881 | ABIE51_RS04495 | | site-specific tyrosine recombinase XerD | strong | 24 | 74 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_04169 | | phage integrase SAM-like domain protein | insig. | 33 | 50 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS04775 | | integrase | insig. | 31 | 44 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU1654 | xerD | site-specific recombinase, phage integrase family (TIGR) | sig. | 25 | 88 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS09900 | | site-specific integrase | insig. | 24 | 79 |
| | Azospirillum brasilense Sp245 | AZOBR_RS03965 | | tyrosine recombinase XerC | no data | 23 | 87 |
| | Bifidobacterium breve UCC2003 | BBR_RS16655 | | tyrosine recombinase XerC | strong | 30 | 47 |
| | Pseudomonas sp. DMC3 | GFF1987 | | Tyrosine recombinase XerD | insig. | 31 | 51 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_1721 | | Tyrosine recombinase XerD | strong | 31 | 51 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_04300 | | site-specific tyrosine recombinase XerD | sig. | 30 | 48 |
| | Enterobacter sp. TBS_079 | MPMX20_03753 | | Tyrosine recombinase XerD | strong | 29 | 48 |