Homologs of GFF988 from Variovorax sp. SCN45

LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23)
SEED: Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)
KEGG: ribosomal large subunit pseudouridine synthase D

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Variovorax sp. SCN45 GFF988 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) cofit 100 100
o Variovorax sp. OAS795 ABID97_RS14190 RluA family pseudouridine synthase strong 89 98
o Acidovorax sp. GW101-3H11 Ac3H11_1787 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) sig. 69 93
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4870 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) sig. 61 92
o Ralstonia sp. UNC404CL21Col ABZR87_RS13315 RluA family pseudouridine synthase strong 50 90
o Cupriavidus basilensis FW507-4G11 RR42_RS07590 pseudouridine synthase strong 49 94
o Ralstonia solanacearum PSI07 RPSI07_RS15970 RluA family pseudouridine synthase insig. 49 92
o Ralstonia solanacearum GMI1000 RS_RS08205 RluA family pseudouridine synthase sig. 48 92
  Paraburkholderia sabiae LMG 24235 QEN71_RS22215 RluA family pseudouridine synthase no data 51 91
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS01520 RluA family pseudouridine synthase insig. 50 91
o Ralstonia solanacearum UW163 UW163_RS14830 RluA family pseudouridine synthase insig. 50 91
  Dechlorosoma suillum PS Dsui_2530 pseudouridine synthase, RluA family sig. 48 90
  Burkholderia phytofirmans PsJN BPHYT_RS09135 ribosomal large subunit pseudouridine synthase D sig. 50 88
  Paraburkholderia graminis OAS925 ABIE53_002062 23S rRNA pseudouridine1911/1915/1917 synthase strong 49 91
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00848 ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-) insig. 50 88
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1362.1 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) sig. 45 92
o Rhodanobacter sp. FW510-T8 OKGIIK_01790 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 49 87
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS05045 23S rRNA pseudouridine(1911/1915/1917) synthase RluD insig. 50 87
o Methylophilus sp. DMC18 GFF1213 Ribosomal large subunit pseudouridine synthase D insig. 45 92
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS10965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 49 85
o Rhodanobacter denitrificans MT42 LRK55_RS04745 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 49 87
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS04965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 49 87
o Lysobacter sp. OAE881 ABIE51_RS04885 23S rRNA pseudouridine(1911/1915/1917) synthase RluD cofit 45 92
o Shewanella loihica PV-4 Shew_2950 RluA family pseudouridine synthase (RefSeq) strong 45 87
o Marinobacter adhaerens HP15 HP15_527 pseudouridine synthase, RluA family strong 45 92
o Herbaspirillum seropedicae SmR1 HSERO_RS15070 ribosomal large subunit pseudouridine synthase D insig. 43 98
o Shewanella amazonensis SB2B Sama_2605 pseudouridylate synthase (RefSeq) no data 44 87
o Rhodospirillum rubrum S1H Rru_A1111 Pseudouridine synthase, RluD (NCBI) strong 44 87
o Shewanella sp. ANA-3 Shewana3_3171 ribosomal large subunit pseudouridine synthase D (RefSeq) strong 44 87
o Alteromonas macleodii MIT1002 MIT1002_02679 Ribosomal large subunit pseudouridine synthase D cofit 42 89
o Pseudomonas putida KT2440 PP_0623 23S rRNA pseudouridine(1911,1915,1917) synthase no data 46 86
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0642 pseudouridine synthase, RluA family strong 37 96
o Pseudomonas sp. BP01 JOY50_RS27130 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD sig. 46 86
o Pseudomonas sp. S08-1 OH686_16410 LSU rRNA pseudouridine(1911/1915/1917) synthase cofit 46 86
o Pseudomonas aeruginosa MRSN321 DY961_RS23730 rluD;go_function=RNA 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 46 86
o Pseudomonas aeruginosa PA14 IKLFDK_00810 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 46 86
o Pseudomonas aeruginosa PUPa3 DQ20_RS56195 rluD;go_function=RNA 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 46 86
o Serratia liquefaciens MT49 IAI46_03985 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 41 90
o Castellaniella sp019104865 MT123 ABCV34_RS01885 RluA family pseudouridine synthase strong 45 85
o Kangiella aquimarina DSM 16071 B158DRAFT_2532 Pseudouridylate synthases, 23S RNA-specific strong 40 89
o Escherichia coli BL21 ECD_02484 23S rRNA pseudouridine(1911,1915,1917) synthase strong 41 89
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01112 Ribosomal large subunit pseudouridine synthase D sig. 41 89
o Escherichia coli BW25113 b2594 rluD 23S rRNA pseudouridine synthase (NCBI) no data 41 89
o Escherichia fergusonii Becca EFB2_01296 Ribosomal large subunit pseudouridine synthase D sig. 41 89
o Escherichia coli ECOR27 NOLOHH_12925 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD cofit 41 89
o Escherichia coli ECRC62 BNILDI_11730 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 41 89
o Escherichia coli Nissle 1917 ECOLIN_RS14675 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 41 89
o Escherichia coli ECRC100 OKFHMN_21250 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD cofit 41 89
o Escherichia coli ECRC101 MCAODC_11780 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 41 89
o Escherichia coli ECRC102 NIAGMN_19020 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 41 89
o Escherichia coli ECRC98 JDDGAC_24915 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 41 89
o Escherichia coli ECRC99 KEDOAH_06970 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD no data 41 89
o Xanthobacter sp. DMC5 GFF2508 Ribosomal large subunit pseudouridine synthase D insig. 44 85
o Rahnella sp. WP5 EX31_RS07570 23S rRNA pseudouridine(1911/1915/1917) synthase RluD cofit 41 89
o Escherichia coli ECOR38 HEPCGN_20375 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 41 89
o Sphingomonas koreensis DSMZ 15582 Ga0059261_0664 pseudouridine synthase, RluA family strong 42 89
o Magnetospirillum magneticum AMB-1 AMB_RS16095 RluA family pseudouridine synthase insig. 41 90
o Azospirillum sp. SherDot2 MPMX19_05442 Ribosomal large subunit pseudouridine synthase D strong 43 91
o Pectobacterium carotovorum WPP14 HER17_RS05400 23S rRNA pseudouridine(1911/1915/1917) synthase RluD sig. 40 89
o Sphingobium sp. HT1-2 GFF4062 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) cofit 44 89
o Enterobacter asburiae PDN3 EX28DRAFT_2695 pseudouridine synthase, RluA family cofit 41 89
o Enterobacter sp. TBS_079 MPMX20_03463 Ribosomal large subunit pseudouridine synthase D strong 41 89
o Klebsiella michiganensis M5al BWI76_RS21450 23S rRNA pseudouridine(1911/1915/1917) synthase sig. 41 89
  Pseudomonas stutzeri RCH2 Psest_0709 pseudouridine synthase, RluA family strong 46 86
o Pseudomonas sp. SVBP6 COO64_RS11055 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD sig. 45 86
o Dickeya dadantii 3937 DDA3937_RS16110 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 41 88
o Klebsiella pneumoniae MKP103 KDGMDA_02140 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 40 89
o Vibrio cholerae E7946 ATCC 55056 CSW01_03695 ribosomal large subunit pseudouridine synthase D strong 40 91
o Fusobacterium nucleatum SB010 HUW76_08575 RluA family pseudouridine synthase strong 34 88
o Pseudomonas syringae pv. syringae B728a Psyr_0726 ribosomal large subunit pseudouridine synthase D strong 44 86
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0726 ribosomal large subunit pseudouridine synthase D strong 44 86
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2822 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) no data 44 86
o Pseudomonas fluorescens FW300-N2E3 AO353_14220 ribosomal large subunit pseudouridine synthase D strong 44 86
o Dickeya dianthicola ME23 DZA65_RS17330 23S rRNA pseudouridine(1911/1915/1917) synthase RluD cofit 40 88
o Pseudomonas sp. DMC3 GFF4004 Ribosomal large subunit pseudouridine synthase D cofit 45 86
o Dickeya dianthicola 67-19 HGI48_RS16235 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 40 88
o Erwinia amylovora T8 OLJFJH_09725 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 39 89
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4182 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) strong 40 89
o Pseudomonas sp. RS175 PFR28_03748 Ribosomal large subunit pseudouridine synthase D strong 45 86
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5127 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) no data 45 86
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1493 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) no data 44 86
  Desulfovibrio vulgaris Hildenborough JW710 DVU1024 rluD/coaE ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase (TIGR) insig. 42 89
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_26870 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 40 91
o Erwinia tracheiphila SCR3 LU632_RS16945 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD sig. 40 91
o Pseudomonas fluorescens FW300-N2C3 AO356_15925 ribosomal large subunit pseudouridine synthase D strong 44 86
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_15205 RNA pseudouridine synthase strong 37 96
o Pseudomonas fluorescens SBW25 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD insig. 44 86
o Pseudomonas fluorescens SBW25-INTG PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 44 86
o Pseudomonas orientalis W4I3 QF045_RS06805 23S rRNA pseudouridine(1911/1915/1917) synthase RluD sig. 44 86
o Pseudomonas simiae WCS417 PS417_03820 ribosomal large subunit pseudouridine synthase D no data 44 86
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS16540 23S rRNA pseudouridine(1911/1915/1917) synthase RluD cofit 40 88
o Pantoea sp. MT58 IAI47_04425 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 40 88
o Pseudomonas lactucae CFBP13502 GEMAOFIL_00969 Ribosomal large subunit pseudouridine synthase D cofit 44 86
o Pseudomonas segetis P6 ACVTMO_RS19440 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 43 86
o Acinetobacter baumannii LAC-4 RR41_RS15070 23S rRNA pseudouridine(1911/1915/1917) synthase RluD insig. 39 88
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS10060 RluA family pseudouridine synthase insig. 42 90
o Caulobacter crescentus NA1000 CCNA_00485 ribosomal large subunit pseudouridine synthase D strong 43 85
o Caulobacter crescentus NA1000 Δfur CCNA_00485 ribosomal large subunit pseudouridine synthase D cofit 43 85
  Desulfovibrio vulgaris Miyazaki F DvMF_0912 pseudouridine synthase, RluA family (RefSeq) no data 40 90
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS08615 RluA family pseudouridine synthase strong 37 95